Wall clock time and date at job start Mon Mar 30 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47353 * 2 1 4 4 S 1.81406 * 109.46931 * 239.99877 * 2 1 3 5 5 C 1.81395 * 103.00025 * 287.16700 * 4 2 1 6 6 C 1.50704 * 110.02002 * 305.86464 * 5 4 2 7 7 H 1.07996 * 119.99541 * 120.01944 * 6 5 4 8 8 C 1.37877 * 119.99963 * 300.02546 * 6 5 4 9 9 N 1.31518 * 119.99621 * 6.58558 * 8 6 5 10 10 Si 1.86795 * 119.99899 * 186.58970 * 8 6 5 11 11 H 1.48496 * 109.47091 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46888 * 120.00109 * 10 8 6 13 13 H 1.48507 * 109.47131 * 239.99696 * 10 8 6 14 14 C 1.54262 * 110.03113 * 184.47027 * 5 4 2 15 15 C 1.54963 * 104.16189 * 217.13675 * 14 5 4 16 16 C 1.54894 * 102.77766 * 37.89116 * 15 14 5 17 17 C 1.53876 * 110.02930 * 67.25706 * 5 4 2 18 18 H 1.09002 * 109.46746 * 188.02722 * 1 2 3 19 19 H 1.08996 * 109.47225 * 68.02341 * 1 2 3 20 20 H 1.08998 * 109.46969 * 308.02350 * 1 2 3 21 21 H 1.08994 * 109.47581 * 120.00109 * 2 1 3 22 22 H 1.08994 * 109.47329 * 59.99578 * 3 2 1 23 23 H 1.09000 * 109.47599 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47179 * 300.00109 * 3 2 1 25 25 H 0.97003 * 119.99589 * 184.99965 * 9 8 6 26 26 H 1.08995 * 110.49172 * 335.78645 * 14 5 4 27 27 H 1.09010 * 110.48417 * 98.43261 * 14 5 4 28 28 H 1.09003 * 110.72392 * 279.57865 * 15 14 5 29 29 H 1.09004 * 110.92431 * 156.29777 * 15 14 5 30 30 H 1.08994 * 110.48967 * 203.40691 * 16 15 14 31 31 H 1.09001 * 110.48505 * 80.75544 * 16 15 14 32 32 H 1.09001 * 110.02897 * 238.56805 * 17 5 4 33 33 H 1.08995 * 110.03366 * 359.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8552 -1.4812 5 6 1.7788 -2.5970 -1.1205 6 6 2.3899 -2.9855 0.2011 7 1 1.7604 -3.3412 1.0033 8 6 3.7526 -2.8867 0.3861 9 7 4.5036 -2.3335 -0.5411 10 14 4.5321 -3.5388 1.9534 11 1 3.4782 -4.1101 2.8297 12 1 5.5186 -4.5953 1.6131 13 1 5.2193 -2.4299 2.6630 14 6 2.3366 -3.4940 -2.2448 15 6 1.2784 -4.6161 -2.3947 16 6 -0.0566 -3.8574 -2.1914 17 6 0.2578 -2.8280 -1.0862 18 1 -0.3633 -1.0176 0.1435 19 1 -0.3633 0.3846 -0.9529 20 1 -0.3633 0.6330 0.8095 21 1 1.8934 -0.5138 0.8899 22 1 1.6767 1.9563 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 5.4688 -2.3289 -0.4444 26 1 2.4283 -2.9299 -3.1729 27 1 3.3002 -3.9135 -1.9554 28 1 1.4113 -5.3769 -1.6255 29 1 1.3218 -5.0619 -3.3885 30 1 -0.8386 -4.5422 -1.8635 31 1 -0.3519 -3.3517 -3.1108 32 1 -0.0381 -3.2219 -0.1139 33 1 -0.2664 -1.8935 -1.2858 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260119562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:42 Heat of formation + Delta-G solvation = -36.526771 kcal Electronic energy + Delta-G solvation = -13310.005353 eV Core-core repulsion = 11267.424055 eV Total energy + Delta-G solvation = -2042.581298 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.77019 -35.39628 -34.50391 -30.15653 -29.33642 -27.81513 -26.01965 -22.55614 -21.35202 -20.60190 -18.48591 -16.94596 -16.70835 -16.29441 -15.71770 -14.88825 -14.60755 -14.15586 -13.92661 -13.59210 -13.26493 -13.02643 -12.93773 -12.51893 -12.31193 -12.27977 -12.06161 -11.70281 -11.61797 -11.43790 -11.19257 -11.07184 -10.88269 -10.45638 -9.87245 -8.32390 -7.37574 -6.16911 1.35690 1.41922 1.49713 1.69144 2.42324 2.52172 3.37293 4.08479 4.16373 4.17358 4.26472 4.35191 4.63897 4.78735 4.82850 4.91537 4.94460 4.95709 4.99628 5.09187 5.16787 5.25436 5.29933 5.37715 5.40818 5.43545 5.46584 5.64950 5.69569 5.88165 6.30455 6.78975 7.44945 8.95511 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.017903 C = 0.012017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.906244 B = 1563.577906 C = 2329.377098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.039 4.039 3 C -0.118 4.118 4 S -0.358 6.358 5 C 0.125 3.875 6 C -0.518 4.518 7 H 0.049 0.951 8 C 0.035 3.965 9 N -0.850 5.850 10 Si 0.932 3.068 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.287 1.287 14 C -0.078 4.078 15 C -0.112 4.112 16 C -0.112 4.112 17 C -0.116 4.116 18 H 0.058 0.942 19 H 0.060 0.940 20 H 0.069 0.931 21 H 0.056 0.944 22 H 0.079 0.921 23 H 0.038 0.962 24 H 0.060 0.940 25 H 0.255 0.745 26 H 0.027 0.973 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.245 0.935 -0.170 7.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C -0.176 4.176 4 S -0.125 6.125 5 C 0.018 3.982 6 C -0.560 4.560 7 H 0.067 0.933 8 C -0.172 4.172 9 N -0.485 5.485 10 Si 0.759 3.241 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.214 1.214 14 C -0.118 4.118 15 C -0.151 4.151 16 C -0.150 4.150 17 C -0.156 4.156 18 H 0.077 0.923 19 H 0.079 0.921 20 H 0.088 0.912 21 H 0.075 0.925 22 H 0.098 0.902 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.572 1.569 -1.135 6.851 hybrid contribution 0.611 -0.858 1.933 2.201 sum -5.960 0.711 0.798 6.055 Atomic orbital electron populations 1.22199 0.93089 1.02300 1.02032 1.22637 0.98394 0.97908 0.97910 1.21533 1.00247 0.93546 1.02313 1.86027 1.85921 1.12639 1.27895 1.20790 0.93489 0.87705 0.96202 1.21385 0.92445 1.44288 0.97860 0.93261 1.25525 0.98166 0.94793 0.98678 1.70396 1.04335 1.38789 1.35015 0.85904 0.78751 0.78125 0.81315 1.19394 1.20666 1.21370 1.21974 0.98413 0.95764 0.95639 1.22434 0.94937 0.96996 1.00721 1.22281 0.96949 0.97375 0.98352 1.22808 0.95305 0.99200 0.98242 0.92332 0.92062 0.91199 0.92526 0.90210 0.94260 0.92129 0.93551 0.95450 0.93731 0.92321 0.91001 0.90603 0.91554 0.93262 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 7.99 71.98 0.57 -4.06 16 2 C -0.04 -1.63 3.12 30.59 0.10 -1.53 16 3 C -0.12 -4.17 9.19 71.98 0.66 -3.51 16 4 S -0.36 -17.31 18.27 -56.49 -1.03 -18.35 16 5 C 0.13 5.96 0.51 -10.82 -0.01 5.95 16 6 C -0.52 -27.05 6.80 25.60 0.17 -26.88 16 7 H 0.05 2.60 7.34 -2.91 -0.02 2.58 16 8 C 0.04 1.86 4.83 84.65 0.41 2.27 16 9 N -0.85 -47.51 10.88 21.45 0.23 -47.27 16 10 Si 0.93 42.60 29.55 68.60 2.03 44.63 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 14 C -0.08 -3.63 5.51 31.69 0.17 -3.46 16 15 C -0.11 -4.17 6.91 31.91 0.22 -3.95 16 16 C -0.11 -3.77 6.83 31.67 0.22 -3.55 16 17 C -0.12 -4.62 4.62 31.32 0.14 -4.48 16 18 H 0.06 2.06 5.31 -2.39 -0.01 2.04 16 19 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 20 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 21 H 0.06 2.67 7.22 -2.39 -0.02 2.65 16 22 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.06 1.99 8.14 -2.38 -0.02 1.98 16 25 H 0.25 13.78 8.32 -92.71 -0.77 13.01 16 26 H 0.03 1.30 7.81 -2.39 -0.02 1.28 16 27 H 0.04 2.34 6.64 -2.38 -0.02 2.32 16 28 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 1.99 7.35 -2.39 -0.02 1.97 16 33 H 0.07 2.67 5.11 -2.39 -0.01 2.66 16 Total: -1.00 -58.04 264.67 4.95 -53.09 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.06 Total: 11.10 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 2.67 Total: -43.19 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.23 Total: -47.27 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: -17.31 SS G_CDS: -1.03 Total: -18.35 kcal Total: -58.04 4.95 -53.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260119562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.564 kcal (2) G-P(sol) polarization free energy of solvation -58.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds