Wall clock time and date at job start Mon Mar 30 2020 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34643 * 116.99947 * 2 1 4 4 O 1.21514 * 120.00042 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00083 * 180.02562 * 3 2 1 6 6 C 1.47079 * 120.88126 * 3.50411 * 5 3 2 7 7 C 1.53239 * 108.52158 * 128.79665 * 6 5 3 8 8 N 1.46902 * 109.33723 * 53.83163 * 7 6 5 9 9 C 1.46894 * 111.26829 * 296.89651 * 8 7 6 10 10 C 1.47074 * 120.88268 * 183.49227 * 5 3 2 11 11 H 1.09001 * 109.63334 * 111.48836 * 10 5 3 12 12 C 1.50704 * 109.62699 * 350.90777 * 10 5 3 13 13 H 1.08000 * 119.99733 * 323.76068 * 12 10 5 14 14 C 1.37882 * 119.99824 * 143.76202 * 12 10 5 15 15 N 1.31512 * 120.00000 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 119.99636 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47557 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47109 * 120.00424 * 16 14 12 19 19 H 1.48503 * 109.47404 * 240.00046 * 16 14 12 20 20 H 1.08996 * 109.46828 * 300.00421 * 1 2 3 21 21 H 1.09001 * 109.46856 * 59.99948 * 1 2 3 22 22 H 1.08994 * 109.46910 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.62840 * 248.51302 * 6 5 3 24 24 H 1.09000 * 109.62812 * 8.89248 * 6 5 3 25 25 H 1.08996 * 109.49061 * 173.78919 * 7 6 5 26 26 H 1.08993 * 109.49399 * 293.87193 * 7 6 5 27 27 H 1.00894 * 110.99606 * 172.74194 * 8 7 6 28 28 H 1.09003 * 109.49421 * 303.14509 * 9 8 7 29 29 H 1.08999 * 109.49480 * 183.06497 * 9 8 7 30 30 H 0.97004 * 119.99801 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4092 1.2703 -0.0005 6 6 4.2290 0.0516 -0.0782 7 6 5.2521 0.2243 -1.2059 8 7 6.0056 1.4673 -0.9930 9 6 5.1254 2.6416 -1.0574 10 6 4.0971 2.5679 0.0764 11 1 4.6043 2.6572 1.0371 12 6 3.0942 3.6824 -0.0766 13 1 2.2565 3.5665 -0.7484 14 6 3.2463 4.8499 0.6410 15 7 4.2667 4.9911 1.4585 16 14 2.0036 6.2315 0.4508 17 1 0.9580 5.8264 -0.5228 18 1 1.3727 6.5142 1.7650 19 1 2.6918 7.4522 -0.0407 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 4.7487 -0.1010 0.8676 24 1 3.5904 -0.8066 -0.2876 25 1 5.9391 -0.6219 -1.2064 26 1 4.7335 0.2728 -2.1633 27 1 6.7646 1.5475 -1.6529 28 1 4.6085 2.6565 -2.0169 29 1 5.7205 3.5485 -0.9503 30 1 4.3734 5.8124 1.9636 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122282.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:25 Heat of formation + Delta-G solvation = -48.995126 kcal Electronic energy + Delta-G solvation = -15250.148038 eV Core-core repulsion = 12660.732857 eV Total energy + Delta-G solvation = -2589.415181 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.61132 -37.43618 -35.32119 -32.93673 -32.71681 -29.97117 -27.43972 -25.84501 -24.32087 -22.15047 -21.02592 -18.94353 -17.59270 -16.35343 -15.83305 -15.29439 -15.12727 -14.54074 -14.01636 -13.53692 -13.43527 -13.10435 -12.90507 -12.00324 -11.87850 -11.46534 -11.14235 -10.97716 -10.85433 -10.47707 -10.36151 -10.20812 -9.94076 -9.35581 -8.61746 -8.15436 -7.90281 -7.34263 -5.96956 -3.87992 3.12803 3.40532 3.46371 3.57299 3.94762 4.52418 4.76157 4.90064 5.41714 5.53006 5.59599 5.67401 5.69130 5.79332 5.89082 6.09941 6.33500 6.48638 6.54284 6.78819 7.10497 7.39931 7.67138 7.75586 7.94012 8.08314 8.12482 8.73778 9.23403 9.47737 9.71193 11.12204 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.024812 B = 0.014726 C = 0.009896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.221961 B = 1900.938742 C = 2828.839981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 O -0.399 6.399 3 C 0.633 3.367 4 O -0.532 6.532 5 N -0.589 5.589 6 C 0.114 3.886 7 C 0.048 3.952 8 N -0.694 5.694 9 C 0.060 3.940 10 C 0.274 3.726 11 H 0.071 0.929 12 C -0.487 4.487 13 H 0.095 0.905 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.904 3.096 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.288 1.288 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.088 0.912 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.025 0.975 27 H 0.329 0.671 28 H 0.018 0.982 29 H 0.082 0.918 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 -9.640 -4.218 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 O -0.315 6.315 3 C 0.387 3.613 4 O -0.417 6.417 5 N -0.330 5.330 6 C -0.011 4.011 7 C -0.082 4.082 8 N -0.325 5.325 9 C -0.070 4.070 10 C 0.176 3.824 11 H 0.089 0.911 12 C -0.526 4.526 13 H 0.113 0.887 14 C -0.144 4.144 15 N -0.539 5.539 16 Si 0.733 3.267 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.215 1.215 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.106 0.894 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.145 0.855 28 H 0.036 0.964 29 H 0.100 0.900 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.944 -9.229 -3.410 9.884 hybrid contribution -0.834 0.776 -0.927 1.469 sum -1.778 -8.452 -4.337 9.665 Atomic orbital electron populations 1.22872 0.76717 1.01797 1.02059 1.86228 1.22544 1.34580 1.88158 1.18642 0.83819 0.81169 0.77677 1.91073 1.64641 1.32155 1.53879 1.48012 1.00885 1.09169 1.74926 1.21623 0.92859 0.88060 0.98525 1.22210 0.95856 0.93344 0.96819 1.60484 1.12979 1.02682 1.56325 1.22665 0.94347 0.91349 0.98638 1.19368 0.89910 0.77486 0.95657 0.91133 1.21843 1.08797 0.96893 1.25027 0.88708 1.24985 0.95584 0.98972 0.94906 1.69959 1.29479 1.26919 1.27547 0.86326 0.81443 0.80994 0.77956 1.19553 1.21270 1.21462 0.92562 0.92761 0.89396 0.91683 0.90315 0.90817 0.95638 0.85476 0.96368 0.90011 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.93 10.56 101.05 1.07 2.00 16 2 O -0.40 -7.75 9.26 -40.33 -0.37 -8.12 16 3 C 0.63 14.99 8.35 54.06 0.45 15.44 16 4 O -0.53 -14.38 12.05 -19.28 -0.23 -14.61 16 5 N -0.59 -13.54 3.01 -171.99 -0.52 -14.06 16 6 C 0.11 2.05 6.60 -3.60 -0.02 2.03 16 7 C 0.05 0.78 6.70 -3.70 -0.02 0.76 16 8 N -0.69 -12.67 6.82 -113.51 -0.77 -13.44 16 9 C 0.06 1.33 5.97 -3.70 -0.02 1.30 16 10 C 0.27 7.06 3.17 -68.64 -0.22 6.85 16 11 H 0.07 2.05 7.27 -51.93 -0.38 1.67 16 12 C -0.49 -13.97 6.38 -34.44 -0.22 -14.19 16 13 H 0.10 2.88 5.52 -52.98 -0.29 2.58 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.54 12.78 55.43 0.71 -25.83 16 16 Si 0.90 22.96 29.54 -169.99 -5.02 17.94 16 17 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.08 1.26 7.01 -51.93 -0.36 0.90 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.33 5.04 8.90 -39.29 -0.35 4.69 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 250.09 15.07 3.77 3.77 Total: -1.00 -32.37 250.09 -5.43 -37.80 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.90 Total: 0.83 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 0.91 Total: 15.73 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.58 Total: -53.33 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.61 Total: -22.74 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.37 -5.43 -37.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122282.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.198 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds