Wall clock time and date at job start Mon Mar 30 2020 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34643 * 116.99947 * 2 1 4 4 O 1.21514 * 120.00042 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00083 * 180.02562 * 3 2 1 6 6 C 1.47079 * 120.88126 * 3.50411 * 5 3 2 7 7 C 1.53239 * 108.52158 * 128.79665 * 6 5 3 8 8 N 1.46902 * 109.33723 * 53.83163 * 7 6 5 9 9 C 1.46894 * 111.26829 * 296.89651 * 8 7 6 10 10 C 1.47074 * 120.88268 * 183.49227 * 5 3 2 11 11 H 1.09001 * 109.63334 * 111.48836 * 10 5 3 12 12 C 1.50704 * 109.62699 * 350.90777 * 10 5 3 13 13 H 1.08000 * 119.99733 * 323.76068 * 12 10 5 14 14 C 1.37882 * 119.99824 * 143.76202 * 12 10 5 15 15 N 1.31512 * 120.00000 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 119.99636 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47557 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47109 * 120.00424 * 16 14 12 19 19 H 1.48503 * 109.47404 * 240.00046 * 16 14 12 20 20 H 1.08996 * 109.46828 * 300.00421 * 1 2 3 21 21 H 1.09001 * 109.46856 * 59.99948 * 1 2 3 22 22 H 1.08994 * 109.46910 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.62840 * 248.51302 * 6 5 3 24 24 H 1.09000 * 109.62812 * 8.89248 * 6 5 3 25 25 H 1.08996 * 109.49061 * 173.78919 * 7 6 5 26 26 H 1.08993 * 109.49399 * 293.87193 * 7 6 5 27 27 H 1.00894 * 110.99606 * 172.74194 * 8 7 6 28 28 H 1.09003 * 109.49421 * 303.14509 * 9 8 7 29 29 H 1.08999 * 109.49480 * 183.06497 * 9 8 7 30 30 H 0.97004 * 119.99801 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4092 1.2703 -0.0005 6 6 4.2290 0.0516 -0.0782 7 6 5.2521 0.2243 -1.2059 8 7 6.0056 1.4673 -0.9930 9 6 5.1254 2.6416 -1.0574 10 6 4.0971 2.5679 0.0764 11 1 4.6043 2.6572 1.0371 12 6 3.0942 3.6824 -0.0766 13 1 2.2565 3.5665 -0.7484 14 6 3.2463 4.8499 0.6410 15 7 4.2667 4.9911 1.4585 16 14 2.0036 6.2315 0.4508 17 1 0.9580 5.8264 -0.5228 18 1 1.3727 6.5142 1.7650 19 1 2.6918 7.4522 -0.0407 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 4.7487 -0.1010 0.8676 24 1 3.5904 -0.8066 -0.2876 25 1 5.9391 -0.6219 -1.2064 26 1 4.7335 0.2728 -2.1633 27 1 6.7646 1.5475 -1.6529 28 1 4.6085 2.6565 -2.0169 29 1 5.7205 3.5485 -0.9503 30 1 4.3734 5.8124 1.9636 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122282.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:25 Heat of formation + Delta-G solvation = -74.642679 kcal Electronic energy + Delta-G solvation = -15251.260200 eV Core-core repulsion = 12660.732857 eV Total energy + Delta-G solvation = -2590.527343 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.36959 -39.06784 -37.05697 -34.89946 -34.51770 -31.77383 -28.91987 -27.54138 -26.16601 -23.89580 -22.67094 -20.68022 -19.46366 -18.19039 -17.57808 -17.03504 -16.69653 -16.45888 -15.47401 -15.37431 -15.11992 -14.67749 -14.52464 -13.89213 -13.52913 -12.97721 -12.90538 -12.82414 -12.67825 -12.43024 -12.02984 -11.95735 -11.55536 -11.35093 -10.73274 -10.12234 -9.60686 -9.10750 -8.14059 -6.09547 1.33978 1.38365 1.51453 1.55342 2.11794 2.45562 3.10463 3.36771 3.44839 4.14414 4.32595 4.40117 4.42909 4.49208 4.60007 4.64343 4.70654 4.86687 5.00008 5.11092 5.39311 5.51416 5.73241 5.89162 5.97779 6.21938 6.61379 6.87600 7.00977 7.45605 7.72807 8.95302 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.024812 B = 0.014726 C = 0.009896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.221961 B = 1900.938742 C = 2828.839981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.388 6.388 3 C 0.629 3.371 4 O -0.576 6.576 5 N -0.596 5.596 6 C 0.107 3.893 7 C 0.051 3.949 8 N -0.696 5.696 9 C 0.077 3.923 10 C 0.276 3.724 11 H 0.033 0.967 12 C -0.495 4.495 13 H 0.076 0.924 14 C 0.009 3.991 15 N -0.928 5.928 16 Si 0.958 3.042 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.140 0.860 23 H 0.067 0.933 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.027 0.973 27 H 0.350 0.650 28 H 0.013 0.987 29 H 0.065 0.935 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 -11.425 -5.021 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.303 6.303 3 C 0.383 3.617 4 O -0.465 6.465 5 N -0.337 5.337 6 C -0.015 4.015 7 C -0.078 4.078 8 N -0.328 5.328 9 C -0.053 4.053 10 C 0.176 3.824 11 H 0.051 0.949 12 C -0.534 4.534 13 H 0.094 0.906 14 C -0.189 4.189 15 N -0.570 5.570 16 Si 0.785 3.215 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.198 1.198 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.158 0.842 23 H 0.086 0.914 24 H 0.122 0.878 25 H 0.137 0.863 26 H 0.046 0.954 27 H 0.169 0.831 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.839 -11.066 -4.231 11.877 hybrid contribution -0.916 1.144 -0.675 1.614 sum -1.755 -9.922 -4.906 11.207 Atomic orbital electron populations 1.23304 0.74133 1.05017 1.01649 1.86206 1.24861 1.31635 1.87588 1.18706 0.84068 0.81774 0.77154 1.91035 1.65613 1.34106 1.55739 1.47861 1.01402 1.09990 1.74476 1.21972 0.93226 0.86652 0.99678 1.22323 0.96138 0.93542 0.95842 1.60329 1.12961 1.02027 1.57492 1.22175 0.93808 0.92658 0.96702 1.19061 0.89974 0.78242 0.95085 0.94916 1.21945 1.08769 0.98091 1.24570 0.90591 1.25635 0.97212 1.00998 0.95072 1.70048 1.30804 1.27543 1.28622 0.85501 0.79348 0.79142 0.77519 1.20384 1.21227 1.19793 0.93328 0.92978 0.84243 0.91428 0.87824 0.86258 0.95435 0.83064 0.96848 0.91706 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.50 10.56 113.37 1.20 2.70 16 2 O -0.39 -14.33 9.26 -55.53 -0.51 -14.84 16 3 C 0.63 29.60 8.35 129.79 1.08 30.68 16 4 O -0.58 -31.70 12.05 19.80 0.24 -31.47 16 5 N -0.60 -27.17 3.01 -928.46 -2.79 -29.96 16 6 C 0.11 3.60 6.60 86.35 0.57 4.17 16 7 C 0.05 1.48 6.70 86.38 0.58 2.06 16 8 N -0.70 -23.91 6.82 -513.04 -3.50 -27.41 16 9 C 0.08 3.42 5.97 86.39 0.52 3.94 16 10 C 0.28 14.49 3.17 44.22 0.14 14.63 16 11 H 0.03 1.97 7.27 -2.39 -0.02 1.95 16 12 C -0.49 -29.14 6.38 25.60 0.16 -28.98 16 13 H 0.08 4.75 5.52 -10.79 -0.06 4.69 16 14 C 0.01 0.51 5.46 84.66 0.46 0.97 16 15 N -0.93 -56.17 12.78 21.45 0.27 -55.89 16 16 Si 0.96 48.10 29.54 68.60 2.03 50.13 16 17 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 18 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 19 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 20 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 23 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.10 2.96 7.01 -2.39 -0.02 2.95 16 25 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.35 9.75 8.90 -89.70 -0.80 8.95 16 28 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.26 14.99 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -71.92 250.09 0.75 -71.18 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.30 Total: 8.09 kcal Atomic # 6 Polarization: 25.47 SS G_CDS: 4.71 Total: 30.18 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -6.02 Total: -113.26 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -0.28 Total: -46.31 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -71.92 0.75 -71.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122282.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.467 kcal (2) G-P(sol) polarization free energy of solvation -71.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds