Wall clock time and date at job start Mon Mar 30 2020 02:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34635 * 117.00041 * 2 1 4 4 O 1.21507 * 120.00032 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00074 * 180.02562 * 3 2 1 6 6 C 1.47081 * 120.88083 * 357.69129 * 5 3 2 7 7 C 1.53243 * 108.52326 * 231.19167 * 6 5 3 8 8 N 1.46894 * 109.33919 * 306.17164 * 7 6 5 9 9 C 1.46901 * 111.27088 * 63.10497 * 8 7 6 10 10 C 1.47075 * 120.88232 * 177.42264 * 5 3 2 11 11 H 1.08999 * 109.63106 * 248.51659 * 10 5 3 12 12 C 1.50697 * 109.62976 * 9.09568 * 10 5 3 13 13 H 1.08001 * 119.99751 * 35.94068 * 12 10 5 14 14 C 1.37883 * 120.00441 * 215.93609 * 12 10 5 15 15 N 1.31513 * 119.99430 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00062 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46913 * 60.00366 * 16 14 12 18 18 H 1.48497 * 109.46698 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47037 * 300.00169 * 16 14 12 20 20 H 1.09001 * 109.47104 * 60.00821 * 1 2 3 21 21 H 1.08995 * 109.47344 * 300.00124 * 1 2 3 22 22 H 1.09005 * 109.47208 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.63049 * 350.90323 * 6 5 3 24 24 H 1.09005 * 109.62837 * 111.48122 * 6 5 3 25 25 H 1.08998 * 109.49116 * 66.13365 * 7 6 5 26 26 H 1.08998 * 109.49108 * 186.18062 * 7 6 5 27 27 H 1.00895 * 110.99871 * 187.25306 * 8 7 6 28 28 H 1.08997 * 109.49073 * 56.85175 * 9 8 7 29 29 H 1.08997 * 109.49528 * 176.90953 * 9 8 7 30 30 H 0.97005 * 119.99571 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2291 0.0501 0.0498 7 6 5.2546 0.1989 1.1787 8 7 6.0076 1.4460 0.9907 9 6 5.1277 2.6188 1.0818 10 6 4.0970 2.5689 -0.0573 11 1 4.6025 2.6739 -1.0173 12 6 3.0945 3.6807 0.1156 13 1 2.2553 3.5520 0.7831 14 6 3.2487 4.8622 -0.5782 15 7 4.2710 5.0190 -1.3906 16 14 2.0056 6.2400 -0.3644 17 1 1.9739 6.6615 1.0592 18 1 2.3954 7.3944 -1.2133 19 1 0.6599 5.7596 -0.7685 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 3.5913 -0.8119 0.2456 24 1 4.7470 -0.0824 -0.9002 25 1 4.7378 0.2271 2.1380 26 1 5.9411 -0.6475 1.1603 27 1 6.7679 1.5123 1.6506 28 1 4.6127 2.6133 2.0425 29 1 5.7227 3.5277 0.9932 30 1 4.3793 5.8501 -1.8790 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:27 Heat of formation + Delta-G solvation = -49.129610 kcal Electronic energy + Delta-G solvation = -15248.206080 eV Core-core repulsion = 12658.785067 eV Total energy + Delta-G solvation = -2589.421013 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.60858 -37.42369 -35.32162 -32.93565 -32.70756 -29.95446 -27.43853 -25.84023 -24.31314 -22.14658 -21.02401 -18.94322 -17.58905 -16.35233 -15.83678 -15.28153 -15.12444 -14.54581 -14.01566 -13.53343 -13.42354 -13.10882 -12.89827 -11.98690 -11.87882 -11.46369 -11.14672 -10.97304 -10.81121 -10.52362 -10.35532 -10.20980 -9.93953 -9.37387 -8.60903 -8.15878 -7.90859 -7.34074 -5.96469 -3.87658 3.13211 3.43795 3.45802 3.54320 3.95028 4.52427 4.76531 4.90129 5.41746 5.53132 5.59553 5.67446 5.69126 5.79547 5.89107 6.10243 6.33357 6.48713 6.54034 6.78824 7.10409 7.40313 7.66581 7.75686 7.94144 8.08414 8.12642 8.73818 9.22291 9.47815 9.71145 11.12598 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.024829 B = 0.014711 C = 0.009888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.453408 B = 1902.821357 C = 2831.049124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 O -0.399 6.399 3 C 0.633 3.367 4 O -0.531 6.531 5 N -0.589 5.589 6 C 0.114 3.886 7 C 0.048 3.952 8 N -0.694 5.694 9 C 0.059 3.941 10 C 0.276 3.724 11 H 0.071 0.929 12 C -0.488 4.488 13 H 0.093 0.907 14 C 0.058 3.942 15 N -0.899 5.899 16 Si 0.905 3.095 17 H -0.279 1.279 18 H -0.291 1.291 19 H -0.276 1.276 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.025 0.975 26 H 0.073 0.927 27 H 0.329 0.671 28 H 0.018 0.982 29 H 0.081 0.919 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 -9.693 4.024 10.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 O -0.315 6.315 3 C 0.387 3.613 4 O -0.417 6.417 5 N -0.330 5.330 6 C -0.011 4.011 7 C -0.082 4.082 8 N -0.325 5.325 9 C -0.071 4.071 10 C 0.177 3.823 11 H 0.089 0.911 12 C -0.527 4.527 13 H 0.111 0.889 14 C -0.144 4.144 15 N -0.539 5.539 16 Si 0.733 3.267 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.201 1.201 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.106 0.894 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.092 0.908 27 H 0.145 0.855 28 H 0.036 0.964 29 H 0.100 0.900 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.932 -9.260 3.213 9.845 hybrid contribution -0.847 0.747 0.982 1.496 sum -1.779 -8.513 4.195 9.655 Atomic orbital electron populations 1.22873 0.76718 1.01795 1.02058 1.86225 1.22542 1.34580 1.88164 1.18636 0.83825 0.81173 0.77709 1.91074 1.64620 1.32185 1.53855 1.48025 1.00883 1.09067 1.75039 1.21630 0.92836 0.88060 0.98540 1.22214 0.95863 0.93261 0.96906 1.60483 1.12895 1.02553 1.56527 1.22752 0.94381 0.91355 0.98576 1.19442 0.89819 0.77367 0.95623 0.91110 1.21727 1.08728 0.96354 1.25868 0.88924 1.24976 0.95561 0.98954 0.94866 1.69942 1.29354 1.26364 1.28241 0.86440 0.82006 0.80478 0.77743 1.20449 1.21710 1.20101 0.92568 0.92760 0.89396 0.90308 0.91653 0.95651 0.90826 0.85491 0.96371 0.90047 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.93 10.56 101.05 1.07 2.00 16 2 O -0.40 -7.75 9.25 -40.31 -0.37 -8.13 16 3 C 0.63 15.00 8.35 54.06 0.45 15.45 16 4 O -0.53 -14.40 12.06 -19.28 -0.23 -14.63 16 5 N -0.59 -13.55 3.00 -171.72 -0.52 -14.07 16 6 C 0.11 2.05 6.60 -3.60 -0.02 2.03 16 7 C 0.05 0.78 6.70 -3.70 -0.02 0.76 16 8 N -0.69 -12.68 6.82 -113.25 -0.77 -13.45 16 9 C 0.06 1.31 6.00 -3.46 -0.02 1.29 16 10 C 0.28 7.11 3.18 -68.41 -0.22 6.89 16 11 H 0.07 2.05 7.28 -51.93 -0.38 1.68 16 12 C -0.49 -14.01 6.38 -34.44 -0.22 -14.23 16 13 H 0.09 2.80 5.54 -52.91 -0.29 2.51 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.90 -26.53 12.78 55.43 0.71 -25.83 16 16 Si 0.90 22.96 29.54 -169.99 -5.02 17.93 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.08 1.27 7.00 -51.93 -0.36 0.90 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.33 5.05 8.90 -39.29 -0.35 4.70 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 250.15 15.07 3.77 3.77 Total: -1.00 -32.33 250.15 -5.42 -37.75 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -3.90 Total: 0.89 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 0.91 Total: 15.76 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.58 Total: -53.34 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.61 Total: -22.76 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.33 -5.42 -37.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.381 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds