Wall clock time and date at job start Mon Mar 30 2020 02:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34635 * 117.00041 * 2 1 4 4 O 1.21507 * 120.00032 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00074 * 180.02562 * 3 2 1 6 6 C 1.47081 * 120.88083 * 357.69129 * 5 3 2 7 7 C 1.53243 * 108.52326 * 231.19167 * 6 5 3 8 8 N 1.46894 * 109.33919 * 306.17164 * 7 6 5 9 9 C 1.46901 * 111.27088 * 63.10497 * 8 7 6 10 10 C 1.47075 * 120.88232 * 177.42264 * 5 3 2 11 11 H 1.08999 * 109.63106 * 248.51659 * 10 5 3 12 12 C 1.50697 * 109.62976 * 9.09568 * 10 5 3 13 13 H 1.08001 * 119.99751 * 35.94068 * 12 10 5 14 14 C 1.37883 * 120.00441 * 215.93609 * 12 10 5 15 15 N 1.31513 * 119.99430 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 120.00062 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46913 * 60.00366 * 16 14 12 18 18 H 1.48497 * 109.46698 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47037 * 300.00169 * 16 14 12 20 20 H 1.09001 * 109.47104 * 60.00821 * 1 2 3 21 21 H 1.08995 * 109.47344 * 300.00124 * 1 2 3 22 22 H 1.09005 * 109.47208 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.63049 * 350.90323 * 6 5 3 24 24 H 1.09005 * 109.62837 * 111.48122 * 6 5 3 25 25 H 1.08998 * 109.49116 * 66.13365 * 7 6 5 26 26 H 1.08998 * 109.49108 * 186.18062 * 7 6 5 27 27 H 1.00895 * 110.99871 * 187.25306 * 8 7 6 28 28 H 1.08997 * 109.49073 * 56.85175 * 9 8 7 29 29 H 1.08997 * 109.49528 * 176.90953 * 9 8 7 30 30 H 0.97005 * 119.99571 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2291 0.0501 0.0498 7 6 5.2546 0.1989 1.1787 8 7 6.0076 1.4460 0.9907 9 6 5.1277 2.6188 1.0818 10 6 4.0970 2.5689 -0.0573 11 1 4.6025 2.6739 -1.0173 12 6 3.0945 3.6807 0.1156 13 1 2.2553 3.5520 0.7831 14 6 3.2487 4.8622 -0.5782 15 7 4.2710 5.0190 -1.3906 16 14 2.0056 6.2400 -0.3644 17 1 1.9739 6.6615 1.0592 18 1 2.3954 7.3944 -1.2133 19 1 0.6599 5.7596 -0.7685 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 3.5913 -0.8119 0.2456 24 1 4.7470 -0.0824 -0.9002 25 1 4.7378 0.2271 2.1380 26 1 5.9411 -0.6475 1.1603 27 1 6.7679 1.5123 1.6506 28 1 4.6127 2.6133 2.0425 29 1 5.7227 3.5277 0.9932 30 1 4.3793 5.8501 -1.8790 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122287.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:27 Heat of formation + Delta-G solvation = -74.722298 kcal Electronic energy + Delta-G solvation = -15249.315862 eV Core-core repulsion = 12658.785067 eV Total energy + Delta-G solvation = -2590.530795 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.36814 -39.05549 -37.05915 -34.89476 -34.51473 -31.75588 -28.92001 -27.53989 -26.15640 -23.89436 -22.66922 -20.68057 -19.45899 -18.19101 -17.58207 -17.02331 -16.69336 -16.46489 -15.47409 -15.37003 -15.10618 -14.68448 -14.51730 -13.87687 -13.53351 -12.98171 -12.89170 -12.82237 -12.68021 -12.42763 -12.02644 -11.96824 -11.55709 -11.35871 -10.72566 -10.13914 -9.60642 -9.10588 -8.13560 -6.09194 1.36212 1.39339 1.50796 1.53564 2.11886 2.45732 3.10801 3.36677 3.45040 4.14474 4.32616 4.40301 4.42727 4.49104 4.59172 4.64414 4.70410 4.86833 4.99823 5.11010 5.39262 5.51505 5.72591 5.89390 5.97493 6.22066 6.61397 6.87356 7.00138 7.45677 7.72711 8.95403 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.024829 B = 0.014711 C = 0.009888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.453408 B = 1902.821357 C = 2831.049124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.388 6.388 3 C 0.628 3.372 4 O -0.576 6.576 5 N -0.597 5.597 6 C 0.107 3.893 7 C 0.051 3.949 8 N -0.696 5.696 9 C 0.077 3.923 10 C 0.278 3.722 11 H 0.033 0.967 12 C -0.497 4.497 13 H 0.075 0.925 14 C 0.010 3.990 15 N -0.928 5.928 16 Si 0.958 3.042 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.288 1.288 20 H 0.047 0.953 21 H 0.051 0.949 22 H 0.140 0.860 23 H 0.104 0.896 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.119 0.881 27 H 0.350 0.650 28 H 0.013 0.987 29 H 0.064 0.936 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -11.497 4.872 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.303 6.303 3 C 0.383 3.617 4 O -0.465 6.465 5 N -0.337 5.337 6 C -0.015 4.015 7 C -0.079 4.079 8 N -0.328 5.328 9 C -0.054 4.054 10 C 0.178 3.822 11 H 0.051 0.949 12 C -0.535 4.535 13 H 0.093 0.907 14 C -0.188 4.188 15 N -0.570 5.570 16 Si 0.784 3.216 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.214 1.214 20 H 0.066 0.934 21 H 0.070 0.930 22 H 0.158 0.842 23 H 0.122 0.878 24 H 0.086 0.914 25 H 0.046 0.954 26 H 0.137 0.863 27 H 0.169 0.831 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.823 -11.118 4.081 11.872 hybrid contribution -0.931 1.117 0.711 1.619 sum -1.754 -10.000 4.793 11.227 Atomic orbital electron populations 1.23304 0.74140 1.05021 1.01635 1.86203 1.24851 1.31630 1.87593 1.18700 0.84074 0.81774 0.77179 1.91036 1.65599 1.34146 1.55734 1.47874 1.01394 1.09889 1.74576 1.21979 0.93207 0.86648 0.99695 1.22326 0.96137 0.93443 0.95947 1.60328 1.12885 1.01940 1.57656 1.22259 0.93829 0.92670 0.96628 1.19137 0.89899 0.78147 0.95049 0.94902 1.21854 1.08715 0.97543 1.25426 0.90694 1.25630 0.97189 1.00978 0.95048 1.70035 1.30699 1.26888 1.29335 0.85619 0.79234 0.78428 0.78298 1.19329 1.20519 1.21400 0.93367 0.92969 0.84228 0.87815 0.91405 0.95434 0.86271 0.83078 0.96831 0.91741 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.51 10.56 113.37 1.20 2.70 16 2 O -0.39 -14.33 9.25 -55.44 -0.51 -14.84 16 3 C 0.63 29.60 8.35 129.79 1.08 30.68 16 4 O -0.58 -31.76 12.06 19.82 0.24 -31.53 16 5 N -0.60 -27.17 3.00 -927.60 -2.79 -29.96 16 6 C 0.11 3.60 6.60 86.35 0.57 4.17 16 7 C 0.05 1.48 6.70 86.39 0.58 2.06 16 8 N -0.70 -23.91 6.82 -512.20 -3.49 -27.40 16 9 C 0.08 3.41 6.00 86.54 0.52 3.93 16 10 C 0.28 14.56 3.18 44.37 0.14 14.71 16 11 H 0.03 1.98 7.28 -2.39 -0.02 1.96 16 12 C -0.50 -29.24 6.38 25.60 0.16 -29.07 16 13 H 0.08 4.67 5.54 -9.59 -0.05 4.61 16 14 C 0.01 0.56 5.46 84.66 0.46 1.02 16 15 N -0.93 -56.17 12.78 21.45 0.27 -55.89 16 16 Si 0.96 48.04 29.54 68.60 2.03 50.06 16 17 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 19 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 20 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.14 2.52 8.14 -2.38 -0.02 2.50 16 23 H 0.10 2.96 7.00 -2.39 -0.02 2.95 16 24 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 25 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.35 9.75 8.90 -89.70 -0.80 8.95 16 28 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 Total: -1.00 -71.87 250.15 0.77 -71.10 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 0.31 Total: 8.26 kcal Atomic # 6 Polarization: 25.48 SS G_CDS: 4.72 Total: 30.20 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -6.00 Total: -113.26 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -0.27 Total: -46.36 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.06 kcal Total: -71.87 0.77 -71.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122287.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.625 kcal (2) G-P(sol) polarization free energy of solvation -71.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds