Wall clock time and date at job start Mon Mar 30 2020 02:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 120.00046 * 2 1 4 4 O 1.21579 * 120.00258 * 0.02562 * 3 2 1 5 5 N 1.34778 * 119.99983 * 179.97438 * 3 2 1 6 6 C 1.47428 * 125.64860 * 359.97438 * 5 3 2 7 7 C 1.54915 * 104.83102 * 155.91040 * 6 5 3 8 8 C 1.55153 * 101.58175 * 37.00975 * 7 6 5 9 9 H 1.09002 * 110.72030 * 82.86195 * 8 7 6 10 10 O 1.42895 * 110.71918 * 205.95748 * 8 7 6 11 11 C 1.34929 * 116.99988 * 207.55697 * 10 8 7 12 12 H 1.07998 * 119.99882 * 0.02562 * 11 10 8 13 13 C 1.38641 * 120.00113 * 179.97438 * 11 10 8 14 14 N 1.31580 * 119.99758 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00015 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46881 * 90.00437 * 15 13 11 17 17 H 1.48499 * 109.47508 * 210.00471 * 15 13 11 18 18 H 1.48499 * 109.47161 * 330.00722 * 15 13 11 19 19 C 1.47486 * 125.59413 * 179.97438 * 5 3 2 20 20 H 1.09001 * 109.46914 * 59.99799 * 1 2 3 21 21 H 1.09000 * 109.46786 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46822 * 299.99663 * 1 2 3 23 23 H 0.97005 * 120.00470 * 180.02562 * 2 1 3 24 24 H 1.09000 * 110.36462 * 37.07589 * 6 5 3 25 25 H 1.08998 * 110.36847 * 274.74797 * 6 5 3 26 26 H 1.09003 * 111.00447 * 278.93450 * 7 6 5 27 27 H 1.09000 * 111.03486 * 155.10368 * 7 6 5 28 28 H 0.96996 * 119.99590 * 179.97438 * 14 13 11 29 29 H 1.09000 * 110.02886 * 61.64190 * 19 5 3 30 30 H 1.09005 * 109.96368 * 300.33047 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2201 0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.3459 -0.0308 0.0017 7 6 5.6882 0.4433 -0.6094 8 6 5.8079 1.8755 -0.0248 9 1 6.2227 1.8473 0.9829 10 8 6.6045 2.7034 -0.8744 11 6 7.2654 3.7244 -0.2902 12 1 7.1785 3.8851 0.7742 13 6 8.0569 4.5664 -1.0560 14 7 8.1632 4.3702 -2.3528 15 14 8.9724 5.9794 -0.2471 16 1 10.3159 5.5164 0.1842 17 1 9.1208 7.0935 -1.2177 18 1 8.2085 6.4517 0.9356 19 6 4.3451 2.3665 0.0000 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9501 -0.8401 -0.0004 24 1 3.9047 -0.8146 -0.6140 25 1 4.4979 -0.3877 1.0203 26 1 5.6346 0.4688 -1.6978 27 1 6.5137 -0.1853 -0.2756 28 1 8.7167 4.9595 -2.8886 29 1 4.1665 2.9538 0.9008 30 1 4.1414 2.9697 -0.8848 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260130786.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:57 Heat of formation + Delta-G solvation = -54.655144 kcal Electronic energy + Delta-G solvation = -14387.643418 eV Core-core repulsion = 11797.982800 eV Total energy + Delta-G solvation = -2589.660618 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.91208 -37.62871 -35.35954 -34.41240 -31.81858 -30.33695 -28.28275 -26.26109 -24.47801 -22.81310 -20.40445 -19.77964 -18.10747 -17.71362 -16.19814 -15.69968 -15.20602 -14.60098 -14.32279 -13.81286 -13.35750 -13.23358 -12.63327 -12.44764 -12.20866 -12.16856 -11.66989 -11.57917 -11.15643 -10.91012 -10.38909 -10.08801 -9.96130 -9.65427 -9.22598 -9.10955 -8.22042 -8.04293 -5.99058 -3.64145 2.82406 3.30569 3.33989 3.37791 3.42469 4.13248 4.29470 4.94823 5.05084 5.17735 5.24388 5.43373 5.49852 5.53632 5.64191 5.74459 5.87678 6.22779 6.35896 6.38522 6.50708 6.53901 6.67829 6.78310 7.22590 7.44227 8.15829 8.38506 8.79466 9.44199 10.07397 11.21348 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.058051 B = 0.006498 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.214607 B = 4308.134651 C = 4544.065497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.754 5.754 3 C 0.717 3.283 4 O -0.592 6.592 5 N -0.631 5.631 6 C 0.103 3.897 7 C -0.128 4.128 8 C 0.090 3.910 9 H 0.058 0.942 10 O -0.274 6.274 11 C -0.368 4.368 12 H 0.066 0.934 13 C 0.026 3.974 14 N -0.887 5.887 15 Si 0.926 3.074 16 H -0.280 1.280 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.104 3.896 20 H 0.056 0.944 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.395 0.605 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.259 0.741 29 H 0.060 0.940 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.962 -11.535 5.366 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.411 5.411 3 C 0.419 3.581 4 O -0.470 6.470 5 N -0.370 5.370 6 C -0.020 4.020 7 C -0.167 4.167 8 C 0.030 3.970 9 H 0.076 0.924 10 O -0.187 6.187 11 C -0.447 4.447 12 H 0.083 0.917 13 C -0.173 4.173 14 N -0.529 5.529 15 Si 0.753 3.247 16 H -0.207 1.207 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.019 4.019 20 H 0.075 0.925 21 H 0.090 0.910 22 H 0.074 0.926 23 H 0.229 0.771 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.408 -10.680 5.018 15.091 hybrid contribution 0.611 0.287 0.621 0.918 sum -8.796 -10.392 5.639 14.737 Atomic orbital electron populations 1.21338 0.78525 1.01521 1.02160 1.44935 1.07440 1.07199 1.81519 1.15486 0.80460 0.84102 0.78079 1.90912 1.67155 1.30491 1.58411 1.47694 1.03065 1.09098 1.77191 1.22255 0.91441 0.88077 1.00239 1.22819 0.95065 0.96626 1.02140 1.22722 0.89267 0.90405 0.94645 0.92430 1.85737 1.59903 1.41289 1.31813 1.20904 1.25315 1.06075 0.92405 0.91659 1.24961 0.98314 0.98526 0.95488 1.70018 1.39952 1.38461 1.04475 0.85953 0.79576 0.80794 0.78388 1.20670 1.20850 1.19938 1.22714 0.90511 0.86299 1.02382 0.92532 0.90963 0.92585 0.77137 0.91390 0.91721 0.89760 0.89935 0.93097 0.92123 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.11 10.70 59.85 0.64 1.75 16 2 N -0.75 -9.43 5.67 -72.07 -0.41 -9.84 16 3 C 0.72 12.70 8.49 -86.92 -0.74 11.96 16 4 O -0.59 -13.01 16.67 5.30 0.09 -12.92 16 5 N -0.63 -10.92 3.34 -175.86 -0.59 -11.51 16 6 C 0.10 1.37 6.58 -2.52 -0.02 1.35 16 7 C -0.13 -2.11 6.81 -24.58 -0.17 -2.27 16 8 C 0.09 1.90 3.45 -24.90 -0.09 1.81 16 9 H 0.06 1.16 7.85 -51.93 -0.41 0.75 16 10 O -0.27 -7.59 9.51 -16.51 -0.16 -7.75 16 11 C -0.37 -10.57 9.82 30.88 0.30 -10.26 16 12 H 0.07 1.76 7.66 -52.49 -0.40 1.36 16 13 C 0.03 0.75 5.49 -17.51 -0.10 0.66 16 14 N -0.89 -27.57 13.67 55.48 0.76 -26.81 16 15 Si 0.93 21.93 29.55 -169.99 -5.02 16.91 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 C 0.10 2.14 6.68 -2.81 -0.02 2.12 16 20 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.40 3.72 7.31 -40.82 -0.30 3.42 16 24 H 0.07 0.71 7.30 -51.93 -0.38 0.33 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.08 1.82 8.06 -51.93 -0.42 1.40 16 LS Contribution 261.24 15.07 3.94 3.94 Total: -1.00 -35.66 261.24 -5.57 -41.23 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -4.00 Total: -0.36 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.18 Total: 7.11 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.24 Total: -48.16 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.07 Total: -20.67 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -35.66 -5.57 -41.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130786.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.426 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds