Wall clock time and date at job start Mon Mar 30 2020 02:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 120.00046 * 2 1 4 4 O 1.21579 * 120.00258 * 0.02562 * 3 2 1 5 5 N 1.34778 * 119.99983 * 179.97438 * 3 2 1 6 6 C 1.47428 * 125.64860 * 359.97438 * 5 3 2 7 7 C 1.54915 * 104.83102 * 155.91040 * 6 5 3 8 8 C 1.55153 * 101.58175 * 37.00975 * 7 6 5 9 9 H 1.09002 * 110.72030 * 82.86195 * 8 7 6 10 10 O 1.42895 * 110.71918 * 205.95748 * 8 7 6 11 11 C 1.34929 * 116.99988 * 207.55697 * 10 8 7 12 12 H 1.07998 * 119.99882 * 0.02562 * 11 10 8 13 13 C 1.38641 * 120.00113 * 179.97438 * 11 10 8 14 14 N 1.31580 * 119.99758 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00015 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46881 * 90.00437 * 15 13 11 17 17 H 1.48499 * 109.47508 * 210.00471 * 15 13 11 18 18 H 1.48499 * 109.47161 * 330.00722 * 15 13 11 19 19 C 1.47486 * 125.59413 * 179.97438 * 5 3 2 20 20 H 1.09001 * 109.46914 * 59.99799 * 1 2 3 21 21 H 1.09000 * 109.46786 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46822 * 299.99663 * 1 2 3 23 23 H 0.97005 * 120.00470 * 180.02562 * 2 1 3 24 24 H 1.09000 * 110.36462 * 37.07589 * 6 5 3 25 25 H 1.08998 * 110.36847 * 274.74797 * 6 5 3 26 26 H 1.09003 * 111.00447 * 278.93450 * 7 6 5 27 27 H 1.09000 * 111.03486 * 155.10368 * 7 6 5 28 28 H 0.96996 * 119.99590 * 179.97438 * 14 13 11 29 29 H 1.09000 * 110.02886 * 61.64190 * 19 5 3 30 30 H 1.09005 * 109.96368 * 300.33047 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5311 2.2201 0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.3459 -0.0308 0.0017 7 6 5.6882 0.4433 -0.6094 8 6 5.8079 1.8755 -0.0248 9 1 6.2227 1.8473 0.9829 10 8 6.6045 2.7034 -0.8744 11 6 7.2654 3.7244 -0.2902 12 1 7.1785 3.8851 0.7742 13 6 8.0569 4.5664 -1.0560 14 7 8.1632 4.3702 -2.3528 15 14 8.9724 5.9794 -0.2471 16 1 10.3159 5.5164 0.1842 17 1 9.1208 7.0935 -1.2177 18 1 8.2085 6.4517 0.9356 19 6 4.3451 2.3665 0.0000 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9501 -0.8401 -0.0004 24 1 3.9047 -0.8146 -0.6140 25 1 4.4979 -0.3877 1.0203 26 1 5.6346 0.4688 -1.6978 27 1 6.5137 -0.1853 -0.2756 28 1 8.7167 4.9595 -2.8886 29 1 4.1665 2.9538 0.9008 30 1 4.1414 2.9697 -0.8848 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260130786.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:57 Heat of formation + Delta-G solvation = -82.812181 kcal Electronic energy + Delta-G solvation = -14388.864399 eV Core-core repulsion = 11797.982800 eV Total energy + Delta-G solvation = -2590.881599 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.29113 -39.23821 -37.14302 -35.62943 -33.90304 -31.83368 -29.72847 -27.47151 -26.50351 -24.15235 -21.95632 -21.10223 -19.80284 -19.37261 -17.74649 -17.18469 -16.83084 -16.06782 -15.79249 -15.38614 -14.91838 -14.54206 -14.26604 -13.89974 -13.80558 -13.41664 -13.14117 -12.99418 -12.74516 -12.69900 -12.12278 -11.82879 -11.50755 -11.43437 -11.17506 -10.31766 -10.19274 -9.54667 -8.18525 -5.88335 1.40430 1.46966 1.54380 1.57175 2.05150 2.33579 3.04595 3.14831 3.65157 3.66976 3.80443 4.18818 4.32733 4.45996 4.53928 4.65595 4.67005 4.81052 4.87992 4.95197 5.10733 5.14158 5.19177 5.32002 5.46053 6.02744 6.20314 6.95639 7.25020 7.48712 8.01803 9.05902 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.058051 B = 0.006498 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.214607 B = 4308.134651 C = 4544.065497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.732 5.732 3 C 0.708 3.292 4 O -0.644 6.644 5 N -0.634 5.634 6 C 0.110 3.890 7 C -0.121 4.121 8 C 0.078 3.922 9 H 0.069 0.931 10 O -0.316 6.316 11 C -0.378 4.378 12 H 0.076 0.924 13 C -0.040 4.040 14 N -0.939 5.939 15 Si 1.003 2.997 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.261 1.261 19 C 0.115 3.885 20 H 0.043 0.957 21 H 0.121 0.879 22 H 0.047 0.953 23 H 0.415 0.585 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.261 0.739 29 H 0.052 0.948 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 -13.437 6.843 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.389 5.389 3 C 0.410 3.590 4 O -0.527 6.527 5 N -0.373 5.373 6 C -0.011 4.011 7 C -0.159 4.159 8 C 0.018 3.982 9 H 0.087 0.913 10 O -0.230 6.230 11 C -0.457 4.457 12 H 0.094 0.906 13 C -0.234 4.234 14 N -0.583 5.583 15 Si 0.825 3.175 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.185 1.185 19 C -0.010 4.010 20 H 0.062 0.938 21 H 0.139 0.861 22 H 0.066 0.934 23 H 0.252 0.748 24 H 0.126 0.874 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.127 0.873 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.609 -12.679 6.519 17.192 hybrid contribution 0.565 0.774 0.175 0.974 sum -9.044 -11.905 6.694 16.381 Atomic orbital electron populations 1.21583 0.76835 1.04397 1.01149 1.44811 1.08351 1.06194 1.79559 1.15798 0.80412 0.84861 0.77946 1.90872 1.68241 1.32851 1.60704 1.47647 1.03272 1.09182 1.77172 1.22519 0.88839 0.87038 1.02749 1.22830 0.98139 0.93905 1.01033 1.23072 0.88179 0.91956 0.94948 0.91322 1.85668 1.60919 1.41896 1.34563 1.21407 1.24893 1.06395 0.93000 0.90616 1.26195 0.99439 1.01599 0.96129 1.70188 1.41527 1.40189 1.06436 0.84787 0.78453 0.76668 0.77547 1.19125 1.20713 1.18540 1.22293 0.91325 0.87487 0.99905 0.93839 0.86059 0.93425 0.74826 0.87432 0.88367 0.91680 0.87274 0.93067 0.92976 0.94787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 10.70 127.77 1.37 3.20 16 2 N -0.73 -16.18 5.67 -500.19 -2.84 -19.01 16 3 C 0.71 24.39 8.49 179.05 1.52 25.91 16 4 O -0.64 -28.87 16.67 -3.96 -0.07 -28.93 16 5 N -0.63 -21.23 3.34 -828.55 -2.77 -24.00 16 6 C 0.11 2.52 6.58 86.86 0.57 3.09 16 7 C -0.12 -3.76 6.81 31.99 0.22 -3.55 16 8 C 0.08 3.29 3.45 31.78 0.11 3.40 16 9 H 0.07 2.71 7.85 -2.39 -0.02 2.69 16 10 O -0.32 -18.04 9.51 -81.98 -0.78 -18.82 16 11 C -0.38 -22.12 9.82 67.92 0.67 -21.45 16 12 H 0.08 4.10 7.66 -2.91 -0.02 4.08 16 13 C -0.04 -2.38 5.49 84.83 0.47 -1.91 16 14 N -0.94 -60.01 13.67 21.61 0.30 -59.72 16 15 Si 1.00 45.28 29.55 68.60 2.03 47.30 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 19 C 0.11 4.86 6.68 86.64 0.58 5.44 16 20 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.41 5.91 7.31 -92.70 -0.68 5.23 16 24 H 0.11 1.69 7.30 -2.39 -0.02 1.67 16 25 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.03 1.70 8.06 -2.38 -0.02 1.68 16 Total: -1.00 -81.85 261.24 1.83 -80.02 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.46 Total: 9.02 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 5.50 Total: 14.14 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -5.31 Total: -102.73 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.85 Total: -47.75 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -81.85 1.83 -80.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130786.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.795 kcal (2) G-P(sol) polarization free energy of solvation -81.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds