Wall clock time and date at job start Mon Mar 30 2020 02:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00328 * 2 1 4 4 O 1.21587 * 119.99694 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00233 * 180.02562 * 3 2 1 6 6 C 1.47026 * 125.64519 * 0.02857 * 5 3 2 7 7 C 1.54330 * 107.26840 * 178.90227 * 6 5 3 8 8 C 1.55155 * 102.94292 * 337.81024 * 7 6 5 9 9 H 1.09001 * 111.00015 * 277.42463 * 8 7 6 10 10 O 1.42901 * 111.03793 * 153.58985 * 8 7 6 11 11 C 1.34923 * 116.99788 * 156.33065 * 10 8 7 12 12 H 1.08002 * 120.00315 * 359.97438 * 11 10 8 13 13 C 1.38640 * 120.00008 * 180.02562 * 11 10 8 14 14 N 1.31578 * 119.99519 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00173 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46796 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47188 * 119.99319 * 15 13 11 18 18 H 1.48499 * 109.47172 * 239.99424 * 15 13 11 19 19 C 1.47420 * 125.65051 * 179.97438 * 5 3 2 20 20 H 1.08995 * 109.47453 * 59.99486 * 1 2 3 21 21 H 1.09000 * 109.47335 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46596 * 299.99456 * 1 2 3 23 23 H 0.97002 * 119.99974 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.88351 * 298.31826 * 6 5 3 25 25 H 1.08998 * 109.88379 * 59.48616 * 6 5 3 26 26 H 1.08998 * 110.71700 * 96.16950 * 7 6 5 27 27 H 1.08991 * 110.72004 * 219.44241 * 7 6 5 28 28 H 0.97001 * 119.99840 * 180.02562 * 14 13 11 29 29 H 1.08997 * 110.36858 * 323.00625 * 19 5 3 30 30 H 1.08999 * 110.36307 * 85.32839 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1671 -0.0005 6 6 4.3435 -0.0277 -0.0017 7 6 5.8078 0.4587 -0.0302 8 6 5.6870 1.8910 -0.6144 9 1 5.6315 1.8655 -1.7027 10 8 6.7696 2.7158 -0.1787 11 6 7.0788 3.7786 -0.9501 12 1 6.5169 3.9733 -1.8516 13 6 8.1187 4.6202 -0.5861 14 7 8.8036 4.3827 0.5120 15 14 8.5473 6.0914 -1.6545 16 1 7.6342 6.1360 -2.8247 17 1 8.3986 7.3386 -0.8623 18 1 9.9501 5.9687 -2.1261 19 6 4.3459 2.3650 -0.0011 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.9500 -0.8401 -0.0004 24 1 4.1647 -0.6129 0.9003 25 1 4.1362 -0.6316 -0.8851 26 1 6.2244 0.4868 0.9767 27 1 6.4116 -0.1736 -0.6810 28 1 9.5309 4.9717 0.7669 29 1 3.9036 3.1488 -0.6160 30 1 4.4997 2.7220 1.0172 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260130790.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:59 Heat of formation + Delta-G solvation = -55.578232 kcal Electronic energy + Delta-G solvation = -14381.334211 eV Core-core repulsion = 11791.633565 eV Total energy + Delta-G solvation = -2589.700646 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94646 -37.63778 -35.38768 -34.43246 -31.82767 -30.38071 -28.28307 -26.28499 -24.48106 -22.78475 -20.40892 -19.82394 -18.10055 -17.74713 -16.13094 -15.76589 -15.14620 -14.65291 -14.31648 -13.71784 -13.59555 -13.09808 -12.81953 -12.46479 -12.29649 -12.15469 -11.62357 -11.56157 -11.14203 -10.89704 -10.37390 -10.10284 -9.97350 -9.66188 -9.20933 -9.12650 -8.27265 -8.01755 -5.99807 -3.64577 2.80965 3.30396 3.34461 3.38508 3.39427 4.11941 4.29960 4.96083 5.06370 5.16673 5.23736 5.38270 5.48039 5.54388 5.68157 5.73154 5.88709 6.21299 6.34899 6.39148 6.48568 6.54435 6.64463 6.76305 7.22069 7.45449 8.13791 8.38202 8.76804 9.43825 10.06548 11.20665 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055411 B = 0.006592 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.197752 B = 4246.754790 C = 4575.633781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.754 5.754 3 C 0.717 3.283 4 O -0.592 6.592 5 N -0.632 5.632 6 C 0.105 3.895 7 C -0.127 4.127 8 C 0.090 3.910 9 H 0.056 0.944 10 O -0.273 6.273 11 C -0.366 4.366 12 H 0.066 0.934 13 C 0.026 3.974 14 N -0.887 5.887 15 Si 0.926 3.074 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.102 3.898 20 H 0.056 0.944 21 H 0.072 0.928 22 H 0.056 0.944 23 H 0.396 0.604 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.259 0.741 29 H 0.073 0.927 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 -11.442 -1.711 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.410 5.410 3 C 0.419 3.581 4 O -0.470 6.470 5 N -0.371 5.371 6 C -0.019 4.019 7 C -0.165 4.165 8 C 0.029 3.971 9 H 0.074 0.926 10 O -0.187 6.187 11 C -0.445 4.445 12 H 0.084 0.916 13 C -0.173 4.173 14 N -0.530 5.530 15 Si 0.753 3.247 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.209 1.209 19 C -0.021 4.021 20 H 0.074 0.926 21 H 0.091 0.909 22 H 0.075 0.925 23 H 0.229 0.771 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.915 -10.609 -1.448 15.289 hybrid contribution 0.279 0.294 -0.670 0.783 sum -10.636 -10.314 -2.119 14.966 Atomic orbital electron populations 1.21339 0.78517 1.01544 1.02161 1.44924 1.07451 1.07204 1.81420 1.15489 0.80429 0.84112 0.78061 1.90913 1.67110 1.30496 1.58508 1.47565 1.03071 1.09265 1.77183 1.21983 0.91256 0.88100 1.00543 1.22631 0.93543 0.96864 1.03442 1.22825 0.87435 0.90297 0.96532 0.92584 1.85710 1.45297 1.38607 1.49054 1.20939 1.15765 1.03044 1.04778 0.91618 1.24956 0.96567 0.98576 0.97185 1.70027 1.21501 1.38067 1.23356 0.85884 0.78274 0.81291 0.79282 1.19830 1.20782 1.20852 1.22880 0.90471 0.86506 1.02275 0.92564 0.90949 0.92541 0.77119 0.91921 0.92064 0.89624 0.90096 0.93152 0.90837 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.08 10.70 59.85 0.64 1.72 16 2 N -0.75 -9.27 5.67 -72.07 -0.41 -9.68 16 3 C 0.72 12.51 8.49 -86.92 -0.74 11.77 16 4 O -0.59 -12.81 16.60 5.29 0.09 -12.72 16 5 N -0.63 -10.82 3.33 -176.25 -0.59 -11.40 16 6 C 0.10 1.39 6.15 -3.06 -0.02 1.37 16 7 C -0.13 -2.07 6.69 -24.89 -0.17 -2.23 16 8 C 0.09 1.90 3.53 -24.59 -0.09 1.82 16 9 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 10 O -0.27 -7.54 9.59 -16.49 -0.16 -7.70 16 11 C -0.37 -10.54 9.82 30.88 0.30 -10.24 16 12 H 0.07 1.80 7.70 -52.49 -0.40 1.39 16 13 C 0.03 0.75 5.49 -17.51 -0.10 0.66 16 14 N -0.89 -27.43 13.67 55.48 0.76 -26.67 16 15 Si 0.93 21.98 29.55 -169.99 -5.02 16.96 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.10 2.09 6.64 -2.54 -0.02 2.07 16 20 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.40 3.67 7.81 -40.82 -0.32 3.35 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 29 H 0.07 1.60 8.04 -51.93 -0.42 1.18 16 30 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 262.18 15.07 3.95 3.95 Total: -1.00 -35.30 262.18 -5.63 -40.93 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.07 Total: -0.61 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.18 Total: 6.93 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.24 Total: -47.75 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.07 Total: -20.42 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -35.30 -5.63 -40.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130790.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.647 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds