Wall clock time and date at job start Mon Mar 30 2020 02:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34776 * 120.00328 * 2 1 4 4 O 1.21587 * 119.99694 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00233 * 180.02562 * 3 2 1 6 6 C 1.47026 * 125.64519 * 0.02857 * 5 3 2 7 7 C 1.54330 * 107.26840 * 178.90227 * 6 5 3 8 8 C 1.55155 * 102.94292 * 337.81024 * 7 6 5 9 9 H 1.09001 * 111.00015 * 277.42463 * 8 7 6 10 10 O 1.42901 * 111.03793 * 153.58985 * 8 7 6 11 11 C 1.34923 * 116.99788 * 156.33065 * 10 8 7 12 12 H 1.08002 * 120.00315 * 359.97438 * 11 10 8 13 13 C 1.38640 * 120.00008 * 180.02562 * 11 10 8 14 14 N 1.31578 * 119.99519 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00173 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46796 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47188 * 119.99319 * 15 13 11 18 18 H 1.48499 * 109.47172 * 239.99424 * 15 13 11 19 19 C 1.47420 * 125.65051 * 179.97438 * 5 3 2 20 20 H 1.08995 * 109.47453 * 59.99486 * 1 2 3 21 21 H 1.09000 * 109.47335 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46596 * 299.99456 * 1 2 3 23 23 H 0.97002 * 119.99974 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.88351 * 298.31826 * 6 5 3 25 25 H 1.08998 * 109.88379 * 59.48616 * 6 5 3 26 26 H 1.08998 * 110.71700 * 96.16950 * 7 6 5 27 27 H 1.08991 * 110.72004 * 219.44241 * 7 6 5 28 28 H 0.97001 * 119.99840 * 180.02562 * 14 13 11 29 29 H 1.08997 * 110.36858 * 323.00625 * 19 5 3 30 30 H 1.08999 * 110.36307 * 85.32839 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1671 -0.0005 6 6 4.3435 -0.0277 -0.0017 7 6 5.8078 0.4587 -0.0302 8 6 5.6870 1.8910 -0.6144 9 1 5.6315 1.8655 -1.7027 10 8 6.7696 2.7158 -0.1787 11 6 7.0788 3.7786 -0.9501 12 1 6.5169 3.9733 -1.8516 13 6 8.1187 4.6202 -0.5861 14 7 8.8036 4.3827 0.5120 15 14 8.5473 6.0914 -1.6545 16 1 7.6342 6.1360 -2.8247 17 1 8.3986 7.3386 -0.8623 18 1 9.9501 5.9687 -2.1261 19 6 4.3459 2.3650 -0.0011 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.9500 -0.8401 -0.0004 24 1 4.1647 -0.6129 0.9003 25 1 4.1362 -0.6316 -0.8851 26 1 6.2244 0.4868 0.9767 27 1 6.4116 -0.1736 -0.6810 28 1 9.5309 4.9717 0.7669 29 1 3.9036 3.1488 -0.6160 30 1 4.4997 2.7220 1.0172 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260130790.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:58 Heat of formation + Delta-G solvation = -83.249689 kcal Electronic energy + Delta-G solvation = -14382.534136 eV Core-core repulsion = 11791.633565 eV Total energy + Delta-G solvation = -2590.900571 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.31151 -39.23559 -37.17348 -35.62709 -33.91353 -31.86876 -29.72048 -27.48616 -26.50436 -24.12590 -21.99238 -21.08929 -19.83369 -19.37036 -17.74750 -17.14632 -16.76263 -16.11471 -15.81347 -15.29557 -15.03180 -14.53503 -14.32050 -14.03734 -13.76974 -13.44344 -13.17754 -13.01320 -12.73935 -12.60316 -12.09697 -11.87353 -11.48822 -11.43772 -11.18857 -10.31549 -10.19931 -9.53802 -8.19601 -5.89168 1.39996 1.45286 1.53744 1.57365 2.04436 2.32717 3.03793 3.13876 3.60384 3.71643 3.85750 4.16300 4.27936 4.45057 4.52673 4.66140 4.67879 4.81292 4.88288 4.95515 5.09388 5.13597 5.19290 5.30450 5.46103 6.03764 6.19928 6.95088 7.24066 7.48161 7.99678 9.04663 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055411 B = 0.006592 C = 0.006118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.197752 B = 4246.754790 C = 4575.633781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.732 5.732 3 C 0.709 3.291 4 O -0.643 6.643 5 N -0.634 5.634 6 C 0.109 3.891 7 C -0.118 4.118 8 C 0.078 3.922 9 H 0.058 0.942 10 O -0.312 6.312 11 C -0.378 4.378 12 H 0.071 0.929 13 C -0.037 4.037 14 N -0.936 5.936 15 Si 1.001 2.999 16 H -0.260 1.260 17 H -0.278 1.278 18 H -0.272 1.272 19 C 0.112 3.888 20 H 0.046 0.954 21 H 0.121 0.879 22 H 0.045 0.955 23 H 0.415 0.585 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.261 0.739 29 H 0.049 0.951 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.364 -13.250 -2.692 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.388 5.388 3 C 0.411 3.589 4 O -0.526 6.526 5 N -0.372 5.372 6 C -0.012 4.012 7 C -0.156 4.156 8 C 0.018 3.982 9 H 0.076 0.924 10 O -0.226 6.226 11 C -0.457 4.457 12 H 0.089 0.911 13 C -0.231 4.231 14 N -0.580 5.580 15 Si 0.824 3.176 16 H -0.184 1.184 17 H -0.204 1.204 18 H -0.198 1.198 19 C -0.012 4.012 20 H 0.064 0.936 21 H 0.139 0.861 22 H 0.064 0.936 23 H 0.252 0.748 24 H 0.114 0.886 25 H 0.117 0.883 26 H 0.092 0.908 27 H 0.123 0.877 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.686 -12.511 -2.438 17.293 hybrid contribution 0.414 0.755 -0.348 0.929 sum -11.272 -11.756 -2.786 16.523 Atomic orbital electron populations 1.21583 0.76816 1.04390 1.01184 1.44804 1.08362 1.06209 1.79462 1.15772 0.80302 0.84874 0.77943 1.90876 1.68131 1.32802 1.60748 1.47489 1.03300 1.09166 1.77266 1.22217 0.88154 0.86829 1.04007 1.22638 0.96312 0.93829 1.02824 1.23129 0.85992 0.92162 0.96943 0.92423 1.85638 1.47742 1.39051 1.50170 1.21371 1.15762 1.03609 1.04936 0.91106 1.26143 0.96388 1.01809 0.98725 1.70179 1.22461 1.39794 1.25599 0.84751 0.78439 0.76816 0.77599 1.18388 1.20366 1.19754 1.22440 0.90969 0.87668 1.00171 0.93562 0.86115 0.93617 0.74841 0.88609 0.88305 0.90829 0.87699 0.92971 0.93257 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 10.70 127.77 1.37 3.14 16 2 N -0.73 -15.78 5.67 -500.21 -2.84 -18.62 16 3 C 0.71 23.91 8.49 179.06 1.52 25.43 16 4 O -0.64 -28.19 16.60 -3.99 -0.07 -28.26 16 5 N -0.63 -20.93 3.33 -829.78 -2.76 -23.69 16 6 C 0.11 2.54 6.15 86.73 0.53 3.07 16 7 C -0.12 -3.65 6.69 31.78 0.21 -3.44 16 8 C 0.08 3.31 3.53 31.98 0.11 3.43 16 9 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 10 O -0.31 -17.72 9.59 -81.93 -0.79 -18.50 16 11 C -0.38 -22.23 9.82 67.92 0.67 -21.56 16 12 H 0.07 3.94 7.70 -2.91 -0.02 3.92 16 13 C -0.04 -2.18 5.49 84.83 0.47 -1.71 16 14 N -0.94 -59.22 13.67 21.61 0.30 -58.92 16 15 Si 1.00 45.42 29.55 68.60 2.03 47.45 16 16 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 19 C 0.11 4.75 6.64 86.85 0.58 5.32 16 20 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 21 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.42 5.79 7.81 -92.71 -0.72 5.06 16 24 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.05 2.26 8.04 -2.39 -0.02 2.24 16 30 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -80.18 262.18 1.74 -78.44 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.41 Total: 8.41 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.46 Total: 13.69 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -5.30 Total: -101.23 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.85 Total: -46.76 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -80.18 1.74 -78.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260130790.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.807 kcal (2) G-P(sol) polarization free energy of solvation -80.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds