Wall clock time and date at job start Mon Mar 30 2020 02:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46831 * 2 1 4 4 C 1.53004 * 109.47137 * 119.99645 * 2 1 3 5 5 C 1.52997 * 109.46918 * 174.99909 * 4 2 1 6 6 H 1.09002 * 109.50637 * 53.87118 * 5 4 2 7 7 O 1.43746 * 109.63507 * 293.55159 * 5 4 2 8 8 C 1.44795 * 104.81340 * 215.81097 * 7 5 4 9 9 C 1.54907 * 101.72153 * 36.10149 * 8 7 5 10 10 H 1.08998 * 110.69855 * 83.00638 * 9 8 7 11 11 C 1.52998 * 110.69337 * 206.04435 * 9 8 7 12 12 C 1.50706 * 109.47348 * 184.99906 * 11 9 8 13 13 H 1.08000 * 119.99302 * 359.97438 * 12 11 9 14 14 C 1.37871 * 120.00436 * 179.72505 * 12 11 9 15 15 N 1.31514 * 120.00481 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99745 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47209 * 90.00365 * 16 14 12 18 18 H 1.48506 * 109.47294 * 210.00213 * 16 14 12 19 19 H 1.48501 * 109.47275 * 330.00116 * 16 14 12 20 20 O 1.43365 * 109.62748 * 174.18065 * 5 4 2 21 21 H 1.08994 * 109.47304 * 300.00026 * 1 2 3 22 22 H 1.09000 * 109.47007 * 60.00241 * 1 2 3 23 23 H 1.08998 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47307 * 240.00337 * 2 1 3 25 25 H 1.09000 * 109.47588 * 59.99798 * 3 2 1 26 26 H 1.09001 * 109.47183 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47129 * 299.99684 * 3 2 1 28 28 H 1.09004 * 109.46667 * 55.00200 * 4 2 1 29 29 H 1.08998 * 109.46830 * 295.00579 * 4 2 1 30 30 H 1.09005 * 110.97240 * 277.99229 * 8 7 5 31 31 H 1.09002 * 111.00824 * 154.22613 * 8 7 5 32 32 H 1.09001 * 109.47671 * 65.00115 * 11 9 8 33 33 H 1.08998 * 109.47454 * 305.00112 * 11 9 8 34 34 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 3.9950 0.1584 1.0326 7 8 3.9436 -1.6977 0.1056 8 6 5.1096 -2.4066 0.5896 9 6 4.7629 -2.5971 2.0873 10 1 4.1220 -3.4676 2.2267 11 6 6.0367 -2.7260 2.9250 12 6 5.6693 -3.0321 4.3542 13 1 4.6311 -3.1248 4.6367 14 6 6.6587 -3.1987 5.2998 15 7 6.3382 -3.4662 6.5469 16 14 8.4547 -3.0458 4.8094 17 1 8.8912 -1.6346 4.9623 18 1 9.2821 -3.9171 5.6820 19 1 8.6187 -3.4641 3.3939 20 8 4.0577 -1.3830 2.4159 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6054 -1.7198 1.2952 29 1 1.7516 -0.1582 2.1370 30 1 6.0099 -1.8037 0.4710 31 1 5.2179 -3.3687 0.0887 32 1 6.5939 -1.7900 2.8856 33 1 6.6529 -3.5325 2.5275 34 1 7.0342 -3.5838 7.2121 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260194693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:36 Heat of formation + Delta-G solvation = -114.855036 kcal Electronic energy + Delta-G solvation = -14757.464402 eV Core-core repulsion = 12268.733664 eV Total energy + Delta-G solvation = -2488.730738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.95738 -36.27148 -34.58030 -33.13764 -31.25498 -28.61173 -27.19324 -26.59975 -23.04283 -22.50845 -20.44583 -19.88937 -16.89224 -16.69359 -16.00761 -15.67753 -14.60784 -14.41449 -13.93506 -13.80611 -13.17283 -12.74368 -12.58526 -12.33355 -12.21938 -12.00808 -11.76460 -11.70598 -11.40187 -11.05089 -10.72897 -10.57450 -10.49199 -10.15705 -9.76056 -9.60181 -9.27661 -8.86603 -8.55502 -6.03961 -4.02033 3.29556 3.36630 3.37460 3.92245 4.40699 4.43512 4.94299 4.96084 4.98433 5.17880 5.29605 5.38952 5.43247 5.57424 5.61636 5.65843 5.75700 5.79700 5.87956 5.93317 6.02232 6.10352 6.20185 6.31896 6.38396 6.45905 6.59820 6.95521 7.18569 7.65976 7.77143 8.52526 9.02141 9.56337 11.09592 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.052701 B = 0.006597 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.175641 B = 4243.557396 C = 4447.553440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.126 4.126 5 C 0.225 3.775 6 H 0.075 0.925 7 O -0.388 6.388 8 C 0.014 3.986 9 C 0.072 3.928 10 H 0.078 0.922 11 C -0.013 4.013 12 C -0.513 4.513 13 H 0.075 0.925 14 C 0.067 3.933 15 N -0.902 5.902 16 Si 0.879 3.121 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.267 1.267 20 O -0.366 6.366 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.022 0.978 33 H 0.033 0.967 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 5.943 -13.715 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.164 4.164 5 C 0.130 3.870 6 H 0.093 0.907 7 O -0.309 6.309 8 C -0.062 4.062 9 C 0.015 3.985 10 H 0.096 0.904 11 C -0.050 4.050 12 C -0.551 4.551 13 H 0.093 0.907 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.191 1.191 20 O -0.287 6.287 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.359 5.978 -13.530 16.101 hybrid contribution 1.097 0.036 -0.076 1.100 sum -5.262 6.014 -13.606 15.779 Atomic orbital electron populations 1.21826 0.95265 1.01690 1.01484 1.21031 0.95526 0.96128 0.98544 1.21917 1.01280 0.96029 1.01525 1.22053 0.94017 1.01851 0.98481 1.24081 0.93894 0.92837 0.76194 0.90738 1.89110 1.45968 1.57617 1.38176 1.24573 0.88866 0.97464 0.95282 1.23815 0.95599 0.87266 0.91803 0.90385 1.19747 0.91443 0.97215 0.96644 1.20993 0.95497 1.47887 0.90732 0.90684 1.25006 0.98931 0.94673 0.94837 1.69906 1.33276 1.49064 1.01802 0.86804 0.85461 0.78345 0.78793 1.20229 1.21280 1.19129 1.89035 1.72804 1.39537 1.27299 0.92713 0.92890 0.92703 0.90589 0.92617 0.92482 0.92903 0.90961 0.90102 0.91114 0.88007 0.95943 0.94908 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.19 37.16 0.34 -1.14 16 2 C -0.09 -1.12 2.88 -90.62 -0.26 -1.38 16 3 C -0.15 -1.63 8.96 37.16 0.33 -1.30 16 4 C -0.13 -1.84 4.77 -26.73 -0.13 -1.97 16 5 C 0.23 3.85 3.89 37.16 0.14 4.00 16 6 H 0.08 1.20 6.30 -51.93 -0.33 0.87 16 7 O -0.39 -6.59 10.88 -59.04 -0.64 -7.23 16 8 C 0.01 0.24 7.40 38.16 0.28 0.52 16 9 C 0.07 1.49 3.58 -25.73 -0.09 1.40 16 10 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 11 C -0.01 -0.32 3.80 -27.88 -0.11 -0.42 16 12 C -0.51 -14.85 9.59 -34.44 -0.33 -15.18 16 13 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 16 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.27 -6.16 6.53 56.52 0.37 -5.79 16 20 O -0.37 -7.87 10.85 -59.04 -0.64 -8.51 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.96 7.75 -51.93 -0.40 0.56 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.65 6.44 -51.93 -0.33 0.31 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 31 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.02 0.54 7.58 -51.93 -0.39 0.14 16 33 H 0.03 0.75 7.18 -51.93 -0.37 0.37 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 276.30 15.07 4.16 4.16 Total: -1.00 -31.27 276.30 -6.57 -37.84 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -5.64 Total: -2.29 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 0.09 Total: -13.60 kcal Atomic # 7 Polarization: -28.05 SS G_CDS: 0.77 Total: -27.28 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -1.28 Total: -15.74 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.27 -6.57 -37.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260194693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.017 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds