Wall clock time and date at job start Mon Mar 30 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47120 * 2 1 4 4 C 1.53000 * 109.47395 * 119.99657 * 2 1 3 5 5 C 1.52998 * 109.46806 * 65.86855 * 4 2 1 6 6 H 1.09001 * 109.51021 * 304.43775 * 5 4 2 7 7 O 1.43748 * 109.63532 * 64.75994 * 5 4 2 8 8 C 1.44991 * 104.93382 * 144.05880 * 7 5 4 9 9 C 1.54913 * 101.62542 * 324.13031 * 8 7 5 10 10 H 1.09002 * 110.69453 * 276.85139 * 9 8 7 11 11 C 1.53000 * 110.69554 * 153.81851 * 9 8 7 12 12 C 1.50696 * 109.47111 * 177.37293 * 11 9 8 13 13 H 1.08008 * 120.00035 * 0.02562 * 12 11 9 14 14 C 1.37874 * 120.00292 * 179.71970 * 12 11 9 15 15 N 1.31517 * 120.00506 * 180.27342 * 14 12 11 16 16 Si 1.86807 * 119.99717 * 0.28169 * 14 12 11 17 17 H 1.48500 * 109.46951 * 89.99526 * 16 14 12 18 18 H 1.48500 * 109.46887 * 209.99485 * 16 14 12 19 19 H 1.48502 * 109.46920 * 329.99647 * 16 14 12 20 20 O 1.43372 * 109.63376 * 184.12558 * 5 4 2 21 21 H 1.08997 * 109.47026 * 300.00092 * 1 2 3 22 22 H 1.09001 * 109.46682 * 59.99923 * 1 2 3 23 23 H 1.08994 * 109.46648 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47451 * 239.99825 * 2 1 3 25 25 H 1.08995 * 109.47134 * 300.26024 * 3 2 1 26 26 H 1.09001 * 109.47263 * 60.26809 * 3 2 1 27 27 H 1.08998 * 109.47212 * 180.26427 * 3 2 1 28 28 H 1.08999 * 109.47090 * 305.87331 * 4 2 1 29 29 H 1.08993 * 109.47778 * 185.86836 * 4 2 1 30 30 H 1.09002 * 111.14493 * 205.99806 * 8 7 5 31 31 H 1.09004 * 110.89789 * 82.15158 * 8 7 5 32 32 H 1.08996 * 109.47071 * 57.37270 * 11 9 8 33 33 H 1.08992 * 109.47020 * 297.37293 * 11 9 8 34 34 H 0.97001 * 120.00129 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6541 -2.1999 1.1777 6 1 0.5759 -2.2887 1.0444 7 8 2.3302 -2.8227 0.0726 8 6 2.6428 -4.1618 0.5326 9 6 2.9620 -3.9118 2.0277 10 1 3.9939 -3.5833 2.1516 11 6 2.6940 -5.1702 2.8556 12 6 3.0738 -4.9170 4.2917 13 1 3.4667 -3.9546 4.5848 14 6 2.9139 -5.9119 5.2328 15 7 3.2404 -5.6892 6.4872 16 14 2.2338 -7.5763 4.7261 17 1 3.3532 -8.4699 4.3340 18 1 1.4964 -8.1776 5.8662 19 1 1.3112 -7.4044 3.5752 20 8 2.0453 -2.8591 2.3893 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3632 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.6729 1.9577 -0.8876 26 1 1.6806 1.9550 0.8924 27 1 3.1300 1.4426 -0.0047 28 1 1.5934 -0.2716 2.1361 29 1 3.1249 -0.6311 1.3034 30 1 3.5107 -4.5643 0.0102 31 1 1.7822 -4.8216 0.4223 32 1 3.2869 -5.9963 2.4632 33 1 1.6355 -5.4237 2.7990 34 1 3.1275 -6.3890 7.1493 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260194695.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:37 Heat of formation + Delta-G solvation = -135.332862 kcal Electronic energy + Delta-G solvation = -14764.494365 eV Core-core repulsion = 12274.875641 eV Total energy + Delta-G solvation = -2489.618723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.37032 -37.33964 -36.06669 -35.13594 -33.07770 -30.05756 -28.17890 -28.02802 -24.82472 -23.78993 -22.19432 -20.91568 -18.97109 -18.17835 -17.47774 -16.95344 -16.43587 -15.62668 -15.23829 -14.96204 -14.83283 -14.54511 -13.86590 -13.73587 -13.64463 -13.30089 -13.15771 -13.00933 -12.74531 -12.41521 -12.06093 -11.89029 -11.76933 -11.61392 -11.52921 -11.40687 -11.02157 -10.77831 -10.34933 -8.28549 -6.33588 1.36477 1.39883 1.51004 2.36599 2.53867 3.01826 3.12854 3.67767 3.87232 3.93452 3.99694 4.05648 4.18942 4.29176 4.50585 4.58678 4.64569 4.76154 4.79400 4.87326 4.90863 5.01764 5.04424 5.08055 5.15554 5.28046 5.38661 5.43949 5.50346 5.60069 6.20920 6.29140 6.72699 7.29031 8.88964 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.052683 B = 0.006620 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.355149 B = 4228.613174 C = 4439.278706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.143 4.143 4 C -0.124 4.124 5 C 0.220 3.780 6 H 0.087 0.913 7 O -0.387 6.387 8 C 0.026 3.974 9 C 0.065 3.935 10 H 0.065 0.935 11 C -0.009 4.009 12 C -0.527 4.527 13 H 0.023 0.977 14 C 0.001 3.999 15 N -0.954 5.954 16 Si 0.956 3.044 17 H -0.259 1.259 18 H -0.286 1.286 19 H -0.244 1.244 20 O -0.401 6.401 21 H 0.057 0.943 22 H 0.070 0.930 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.028 0.972 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.555 7.052 -16.063 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 C -0.200 4.200 4 C -0.161 4.161 5 C 0.126 3.874 6 H 0.104 0.896 7 O -0.308 6.308 8 C -0.050 4.050 9 C 0.008 3.992 10 H 0.083 0.917 11 C -0.047 4.047 12 C -0.565 4.565 13 H 0.041 0.959 14 C -0.196 4.196 15 N -0.595 5.595 16 Si 0.779 3.221 17 H -0.183 1.183 18 H -0.212 1.212 19 H -0.167 1.167 20 O -0.323 6.323 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.152 0.848 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.572 7.145 -15.904 18.025 hybrid contribution 0.001 -0.660 0.724 0.980 sum -4.571 6.485 -15.180 17.128 Atomic orbital electron populations 1.21906 0.94426 1.01713 1.02560 1.20996 0.96509 0.96570 0.96592 1.21811 1.00918 0.94825 1.02474 1.22055 1.01729 0.92400 0.99954 1.24330 0.96139 0.92170 0.74799 0.89615 1.89126 1.78354 1.26440 1.36888 1.24628 1.03302 0.84659 0.92417 1.23712 0.93020 0.88297 0.94140 0.91712 1.19670 0.97686 0.93412 0.93904 1.21280 1.42545 0.99035 0.93601 0.95869 1.26095 0.95256 1.03688 0.94529 1.70087 1.50410 1.35710 1.03255 0.85579 0.79621 0.78225 0.78718 1.18344 1.21182 1.16704 1.89006 1.64268 1.48774 1.30211 0.92388 0.91092 0.93219 0.91070 0.91144 0.92467 0.92924 0.90438 0.92099 0.84844 0.89602 0.92987 0.95403 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.97 71.98 0.65 -2.29 16 2 C -0.09 -1.97 2.87 -10.79 -0.03 -2.00 16 3 C -0.14 -2.66 9.19 71.98 0.66 -2.00 16 4 C -0.12 -3.57 4.77 30.59 0.15 -3.42 16 5 C 0.22 7.39 3.89 71.98 0.28 7.67 16 6 H 0.09 2.67 6.40 -2.39 -0.02 2.65 16 7 O -0.39 -12.38 10.79 -126.22 -1.36 -13.74 16 8 C 0.03 0.79 7.42 72.64 0.54 1.33 16 9 C 0.07 2.68 3.59 31.25 0.11 2.79 16 10 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 11 C -0.01 -0.44 3.81 29.85 0.11 -0.33 16 12 C -0.53 -31.31 9.55 25.60 0.24 -31.07 16 13 H 0.02 1.56 7.99 -2.91 -0.02 1.53 16 14 C 0.00 0.03 5.47 84.65 0.46 0.50 16 15 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 16 Si 0.96 43.81 27.47 68.60 1.88 45.69 16 17 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 20 O -0.40 -17.52 10.80 -126.22 -1.36 -18.88 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 23 H 0.05 1.04 6.50 -2.39 -0.02 1.03 16 24 H 0.07 1.68 7.67 -2.39 -0.02 1.67 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.09 2.40 8.04 -2.38 -0.02 2.39 16 32 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 33 H 0.03 1.29 7.19 -2.39 -0.02 1.27 16 34 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -69.43 276.26 3.63 -65.80 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.99 Total: 10.82 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 3.17 Total: -28.82 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.30 Total: -60.87 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -2.73 Total: -32.62 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -69.43 3.63 -65.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260194695.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.529 kcal (2) G-P(sol) polarization free energy of solvation -69.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds