Wall clock time and date at job start Mon Mar 30 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46881 * 2 1 4 4 C 1.53002 * 109.47344 * 119.99735 * 2 1 3 5 5 C 1.52992 * 109.47361 * 175.00001 * 4 2 1 6 6 H 1.09000 * 110.45030 * 55.93788 * 5 4 2 7 7 O 1.44398 * 110.40562 * 293.55335 * 5 4 2 8 8 C 1.44296 * 104.61250 * 201.87195 * 7 5 4 9 9 C 1.54174 * 104.93752 * 23.63423 * 8 7 5 10 10 H 1.08994 * 110.34678 * 241.02891 * 9 8 7 11 11 C 1.53006 * 110.34152 * 118.86851 * 9 8 7 12 12 C 1.50699 * 109.46866 * 174.99926 * 11 9 8 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 9 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00305 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99832 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46901 * 89.99815 * 16 14 12 18 18 H 1.48488 * 109.47487 * 210.00255 * 16 14 12 19 19 H 1.48503 * 109.47026 * 330.00635 * 16 14 12 20 20 O 1.44288 * 104.94196 * 0.02562 * 9 8 7 21 21 H 1.09007 * 109.47410 * 300.00067 * 1 2 3 22 22 H 1.08997 * 109.47356 * 59.99901 * 1 2 3 23 23 H 1.08998 * 109.47203 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47555 * 240.00457 * 2 1 3 25 25 H 1.09005 * 109.46740 * 60.00115 * 3 2 1 26 26 H 1.09002 * 109.46794 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47206 * 300.00190 * 3 2 1 28 28 H 1.09005 * 109.46566 * 55.00504 * 4 2 1 29 29 H 1.09001 * 109.47011 * 295.00593 * 4 2 1 30 30 H 1.09009 * 110.34214 * 264.77243 * 8 7 5 31 31 H 1.09000 * 110.34952 * 142.50347 * 8 7 5 32 32 H 1.08993 * 109.46955 * 295.00145 * 11 9 8 33 33 H 1.09000 * 109.47050 * 54.99974 * 11 9 8 34 34 H 0.97002 * 120.00008 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 4.0132 0.1554 1.0694 7 8 3.9640 -1.6988 0.1051 8 6 5.2927 -2.1358 0.4597 9 6 5.3651 -1.9843 1.9923 10 1 6.1493 -1.2789 2.2667 11 6 5.6188 -3.3425 2.6495 12 6 5.8081 -3.1552 4.1328 13 1 5.7534 -2.1663 4.5635 14 6 6.0521 -4.2461 4.9399 15 7 6.2179 -4.0826 6.2342 16 14 6.1474 -5.9565 4.1948 17 1 7.5493 -6.2472 3.8006 18 1 5.6965 -6.9577 5.1943 19 1 5.2723 -6.0240 2.9969 20 8 4.0712 -1.4749 2.3773 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.6766 1.9564 0.8901 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6054 -1.7198 1.2951 29 1 1.7516 -0.1583 2.1370 30 1 6.0401 -1.5032 -0.0194 31 1 5.4378 -3.1777 0.1745 32 1 4.7655 -3.9971 2.4719 33 1 6.5158 -3.7910 2.2225 34 1 6.3892 -4.8501 6.8021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260194698.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:39 Heat of formation + Delta-G solvation = -115.736384 kcal Electronic energy + Delta-G solvation = -14774.689595 eV Core-core repulsion = 12285.920639 eV Total energy + Delta-G solvation = -2488.768956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.89817 -36.32680 -34.49612 -33.11795 -31.25740 -28.63464 -27.22977 -26.65719 -22.92556 -22.50473 -20.66088 -19.59709 -17.16870 -16.32297 -15.98178 -15.50447 -14.83564 -14.74257 -14.05402 -13.77708 -13.07977 -12.89633 -12.35011 -12.30784 -12.10372 -12.06801 -11.69667 -11.54019 -11.42966 -10.95949 -10.77612 -10.58439 -10.51048 -10.31373 -9.74599 -9.43539 -9.30675 -9.02373 -8.53771 -6.02444 -4.00165 3.30121 3.38438 3.41871 4.04772 4.28724 4.45534 4.91469 4.93171 5.00641 5.18684 5.27005 5.33343 5.42868 5.47591 5.57009 5.68152 5.75786 5.77350 5.89335 5.92199 6.00535 6.08797 6.20021 6.28175 6.40531 6.43130 6.67009 6.95672 7.19374 7.57269 7.77590 8.54112 9.03373 9.58316 11.11111 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.047962 B = 0.006723 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.654727 B = 4163.895156 C = 4263.690334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.109 4.109 5 C 0.218 3.782 6 H 0.066 0.934 7 O -0.386 6.386 8 C 0.016 3.984 9 C 0.065 3.935 10 H 0.076 0.924 11 C -0.013 4.013 12 C -0.513 4.513 13 H 0.075 0.925 14 C 0.067 3.933 15 N -0.902 5.902 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.266 1.266 20 O -0.357 6.357 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.028 0.972 33 H 0.027 0.973 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 7.358 -13.330 16.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.146 4.146 5 C 0.123 3.877 6 H 0.083 0.917 7 O -0.307 6.307 8 C -0.061 4.061 9 C 0.007 3.993 10 H 0.094 0.906 11 C -0.050 4.050 12 C -0.551 4.551 13 H 0.093 0.907 14 C -0.134 4.134 15 N -0.541 5.541 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.190 1.190 20 O -0.277 6.277 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.034 7.189 -13.133 16.542 hybrid contribution 0.391 -0.854 -0.214 0.964 sum -6.642 6.335 -13.348 16.199 Atomic orbital electron populations 1.21821 0.95060 1.01832 1.01545 1.21039 0.95679 0.96075 0.98448 1.21925 1.01204 0.96034 1.01613 1.21660 0.92075 1.02319 0.98573 1.24515 0.95037 0.91910 0.76211 0.91670 1.89154 1.31392 1.65848 1.44277 1.24217 0.84397 1.01295 0.96173 1.23610 0.85377 0.99170 0.91100 0.90633 1.19782 0.96831 0.90792 0.97606 1.21004 1.48347 0.95977 0.89742 0.90729 1.25001 0.94749 0.98959 0.94735 1.69909 1.49483 1.30793 1.03948 0.86819 0.78668 0.84619 0.79446 1.20243 1.21242 1.19022 1.89416 1.32920 1.73792 1.31609 0.92664 0.92801 0.92575 0.90451 0.92585 0.92582 0.92802 0.90321 0.89964 0.91751 0.88838 0.95370 0.95490 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.19 37.16 0.34 -1.10 16 2 C -0.09 -1.10 2.88 -90.62 -0.26 -1.36 16 3 C -0.15 -1.57 8.96 37.16 0.33 -1.23 16 4 C -0.11 -1.58 4.84 -26.73 -0.13 -1.71 16 5 C 0.22 3.73 3.62 37.15 0.13 3.87 16 6 H 0.07 1.01 6.45 -51.93 -0.34 0.67 16 7 O -0.39 -6.81 11.04 -59.42 -0.66 -7.47 16 8 C 0.02 0.27 7.56 37.77 0.29 0.56 16 9 C 0.06 1.35 3.48 -26.11 -0.09 1.26 16 10 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 11 C -0.01 -0.31 3.57 -27.88 -0.10 -0.41 16 12 C -0.51 -14.97 9.55 -34.44 -0.33 -15.30 16 13 H 0.07 2.37 7.99 -52.48 -0.42 1.95 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 16 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 20 O -0.36 -7.79 11.05 -59.42 -0.66 -8.45 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.97 7.79 -51.93 -0.40 0.57 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.61 6.50 -51.93 -0.34 0.27 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.09 1.52 7.71 -51.93 -0.40 1.12 16 32 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 33 H 0.03 0.62 7.57 -51.93 -0.39 0.22 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 276.19 15.07 4.16 4.16 Total: -1.00 -31.92 276.19 -6.59 -38.51 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.64 Total: -2.91 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 7 Polarization: -28.25 SS G_CDS: 0.77 Total: -27.48 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -1.31 Total: -15.92 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.92 -6.59 -38.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260194698.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.226 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds