Wall clock time and date at job start Mon Mar 30 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46997 * 2 1 4 4 C 1.52995 * 109.47130 * 120.00120 * 2 1 3 5 5 C 1.53008 * 109.46934 * 175.00302 * 4 2 1 6 6 H 1.08999 * 110.08819 * 304.85314 * 5 4 2 7 7 O 1.43777 * 110.11791 * 66.45239 * 5 4 2 8 8 C 1.43889 * 107.10956 * 144.32605 * 7 5 4 9 9 C 1.54455 * 105.07848 * 358.29042 * 8 7 5 10 10 H 1.09002 * 110.73063 * 96.73531 * 9 8 7 11 11 C 1.52997 * 110.73078 * 219.84911 * 9 8 7 12 12 C 1.50694 * 109.47460 * 182.53919 * 11 9 8 13 13 H 1.08002 * 120.00179 * 359.97438 * 12 11 9 14 14 C 1.37879 * 120.00472 * 180.02562 * 12 11 9 15 15 N 1.31514 * 119.99350 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00608 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47339 * 179.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 300.00306 * 16 14 12 19 19 H 1.48504 * 109.46636 * 59.99865 * 16 14 12 20 20 O 1.44579 * 110.20984 * 183.40088 * 5 4 2 21 21 H 1.08996 * 109.46799 * 299.99745 * 1 2 3 22 22 H 1.08997 * 109.47306 * 59.99534 * 1 2 3 23 23 H 1.08998 * 109.46904 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47212 * 240.00341 * 2 1 3 25 25 H 1.09002 * 109.46861 * 60.00126 * 3 2 1 26 26 H 1.09002 * 109.46566 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47008 * 300.00181 * 3 2 1 28 28 H 1.08998 * 109.47418 * 55.00211 * 4 2 1 29 29 H 1.09005 * 109.46982 * 294.99701 * 4 2 1 30 30 H 1.08998 * 110.32063 * 239.39145 * 8 7 5 31 31 H 1.08989 * 110.40839 * 117.23416 * 8 7 5 32 32 H 1.09005 * 109.46800 * 62.54390 * 11 9 8 33 33 H 1.08998 * 109.47382 * 302.54189 * 11 9 8 34 34 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1879 6 1 3.8683 -1.3170 0.2607 7 8 4.1588 0.4753 1.2787 8 6 5.3775 0.3349 2.0306 9 6 5.4399 -1.1586 2.4195 10 1 6.0631 -1.7141 1.7186 11 6 5.9571 -1.3246 3.8498 12 6 6.0657 -2.7914 4.1777 13 1 5.7927 -3.5314 3.4399 14 6 6.5125 -3.1890 5.4200 15 7 6.8444 -2.2880 6.3186 16 14 6.6464 -5.0073 5.8267 17 1 7.1484 -5.1683 7.2149 18 1 5.3089 -5.6411 5.7068 19 1 7.5890 -5.6577 4.8813 20 8 4.0578 -1.5803 2.3219 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9564 0.8900 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6055 -1.7198 1.2951 29 1 1.7517 -0.1583 2.1369 30 1 5.3447 0.9577 2.9245 31 1 6.2366 0.6020 1.4153 32 1 5.2652 -0.8474 4.5440 33 1 6.9387 -0.8591 3.9376 34 1 7.1584 -2.5676 7.1928 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260194701.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:40 Heat of formation + Delta-G solvation = -117.111147 kcal Electronic energy + Delta-G solvation = -14786.165887 eV Core-core repulsion = 12297.337316 eV Total energy + Delta-G solvation = -2488.828570 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.81448 -36.20264 -34.41865 -33.16463 -30.99647 -28.39754 -27.05841 -26.33531 -23.18988 -22.25165 -20.72496 -19.69423 -17.05971 -16.19649 -15.80308 -15.21620 -15.02211 -14.45281 -14.02912 -13.64216 -13.13620 -12.69783 -12.49756 -12.14758 -11.98589 -11.81822 -11.49309 -11.28658 -11.13755 -10.71924 -10.59832 -10.55449 -10.54037 -10.46510 -9.77852 -9.32091 -9.18050 -9.04962 -8.39134 -6.01934 -4.03370 3.34672 3.38429 3.41970 4.07557 4.36139 4.45957 4.95598 5.05014 5.17494 5.33219 5.34959 5.41962 5.57734 5.60466 5.73984 5.75610 5.77018 5.86267 5.98371 6.09023 6.16080 6.27473 6.33630 6.38888 6.52909 6.67252 6.83743 7.37456 7.54508 7.79495 7.94611 8.35081 9.00168 9.59803 11.09631 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.050359 B = 0.006524 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.871541 B = 4291.002574 C = 4632.444014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.152 4.152 4 C -0.114 4.114 5 C 0.223 3.777 6 H 0.062 0.938 7 O -0.386 6.386 8 C 0.017 3.983 9 C 0.056 3.944 10 H 0.068 0.932 11 C 0.028 3.972 12 C -0.514 4.514 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.896 3.104 17 H -0.287 1.287 18 H -0.276 1.276 19 H -0.277 1.277 20 O -0.358 6.358 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 5.063 -11.450 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.151 4.151 5 C 0.127 3.873 6 H 0.079 0.921 7 O -0.308 6.308 8 C -0.060 4.060 9 C -0.001 4.001 10 H 0.086 0.914 11 C -0.009 4.009 12 C -0.552 4.552 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.724 3.276 17 H -0.213 1.213 18 H -0.202 1.202 19 H -0.202 1.202 20 O -0.278 6.278 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.891 5.111 -11.209 14.630 hybrid contribution 0.308 -1.067 0.269 1.142 sum -7.584 4.044 -10.940 13.912 Atomic orbital electron populations 1.21827 0.95297 1.01538 1.01622 1.21010 0.95412 0.97104 0.97466 1.22029 1.03372 0.94919 1.00522 1.21789 0.92549 1.01663 0.99122 1.24252 0.93268 0.79185 0.90549 0.92119 1.88831 1.37525 1.29780 1.74665 1.24161 0.86923 0.98746 0.96123 1.24085 0.82636 0.90525 1.02819 0.91366 1.19197 0.96320 0.98259 0.87140 1.21071 1.43504 0.91684 0.98982 0.92456 1.24995 0.95412 0.97727 0.96296 1.69944 1.44888 1.33177 1.05665 0.86592 0.78477 0.85306 0.77265 1.21282 1.20185 1.20246 1.89622 1.25531 1.64021 1.48636 0.92640 0.92856 0.92822 0.91507 0.93009 0.89921 0.93846 0.90278 0.90503 0.90127 0.90949 0.95265 0.94728 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.19 37.16 0.34 -1.14 16 2 C -0.09 -1.10 2.92 -90.62 -0.26 -1.37 16 3 C -0.15 -1.87 8.59 37.16 0.32 -1.55 16 4 C -0.11 -1.67 4.94 -26.73 -0.13 -1.80 16 5 C 0.22 3.85 3.85 37.16 0.14 4.00 16 6 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 7 O -0.39 -6.71 7.94 -59.26 -0.47 -7.18 16 8 C 0.02 0.30 7.66 37.92 0.29 0.59 16 9 C 0.06 1.21 3.33 -25.97 -0.09 1.12 16 10 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 11 C 0.03 0.72 4.62 -27.89 -0.13 0.59 16 12 C -0.51 -14.74 9.00 -34.44 -0.31 -15.05 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 16 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 O -0.36 -7.85 11.14 -59.26 -0.66 -8.51 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.16 5.30 -51.93 -0.28 0.88 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.46 7.85 -51.93 -0.41 1.05 16 31 H 0.07 1.12 8.14 -51.94 -0.42 0.69 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 277.83 15.07 4.19 4.19 Total: -1.00 -30.31 277.83 -6.87 -37.19 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.72 Total: -3.33 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -1.13 Total: -15.69 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.31 -6.87 -37.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260194701.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.924 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds