Wall clock time and date at job start Mon Mar 30 2020 02:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47559 * 2 1 4 4 O 1.42966 * 109.47138 * 120.00362 * 2 1 3 5 5 C 1.43095 * 113.77173 * 178.79077 * 4 2 1 6 6 C 1.53255 * 108.94371 * 302.02881 * 5 4 2 7 7 C 1.53000 * 109.57754 * 174.32949 * 6 5 4 8 8 C 1.52995 * 109.47274 * 174.99757 * 7 6 5 9 9 C 1.50701 * 109.47108 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00099 * 0.02562 * 9 8 7 11 11 C 1.37875 * 119.99833 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00532 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00071 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46830 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47233 * 119.99998 * 13 11 9 16 16 H 1.48499 * 109.47392 * 240.00464 * 13 11 9 17 17 C 1.53261 * 108.84677 * 54.52060 * 6 5 4 18 18 O 1.42972 * 109.47001 * 239.99833 * 2 1 3 19 19 H 1.09001 * 109.47048 * 299.99977 * 1 2 3 20 20 H 1.08998 * 109.46802 * 59.99413 * 1 2 3 21 21 H 1.08992 * 109.47184 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47091 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.47200 * 299.99807 * 3 2 1 24 24 H 1.09001 * 109.46922 * 59.99945 * 3 2 1 25 25 H 1.09008 * 109.55651 * 61.86841 * 5 4 2 26 26 H 1.08995 * 109.55929 * 182.18916 * 5 4 2 27 27 H 1.09003 * 109.57605 * 294.71615 * 6 5 4 28 28 H 1.08998 * 109.47118 * 295.00305 * 7 6 5 29 29 H 1.09002 * 109.47029 * 55.00102 * 7 6 5 30 30 H 1.08998 * 109.47495 * 300.00316 * 8 7 6 31 31 H 1.09002 * 109.46811 * 60.00211 * 8 7 6 32 32 H 0.96992 * 120.00409 * 179.97438 * 12 11 9 33 33 H 1.08993 * 109.56357 * 185.63760 * 17 6 5 34 34 H 1.08999 * 109.55739 * 65.31322 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0065 -0.6740 1.1673 5 6 3.4332 -0.7517 1.2465 6 6 3.9623 -1.4693 0.0000 7 6 5.4920 -1.4361 -0.0001 8 6 6.0199 -2.2588 -1.1770 9 6 7.5266 -2.2256 -1.1774 10 1 8.0547 -1.6733 -0.4143 11 6 8.2307 -2.9012 -2.1515 12 7 7.5876 -3.5742 -3.0805 13 14 10.0983 -2.8606 -2.1516 14 1 10.5756 -2.0406 -1.0092 15 1 10.6234 -4.2435 -2.0213 16 1 10.5804 -2.2658 -3.4240 17 6 3.4331 -0.7517 -1.2466 18 8 2.0065 -0.6740 -1.1674 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 3.1301 1.4424 -0.0005 23 1 1.6768 1.9563 -0.8900 24 1 1.6768 1.9563 0.8900 25 1 3.8513 0.2540 1.2937 26 1 3.7193 -1.3097 2.1379 27 1 3.6176 -2.5034 -0.0001 28 1 5.8330 -0.4052 -0.0953 29 1 5.8646 -1.8572 0.9337 30 1 5.6789 -3.2897 -1.0818 31 1 5.6473 -1.8377 -2.1108 32 1 8.0830 -4.0491 -3.7659 33 1 3.7193 -1.3097 -2.1380 34 1 3.8512 0.2539 -1.2938 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260226431.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:11 Heat of formation + Delta-G solvation = -118.968108 kcal Electronic energy + Delta-G solvation = -14943.757435 eV Core-core repulsion = 12454.848341 eV Total energy + Delta-G solvation = -2488.909094 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.16823 -35.43925 -35.29773 -32.86054 -31.43826 -28.87672 -27.43499 -25.71440 -24.66043 -22.16932 -20.45695 -19.21972 -17.41808 -16.43919 -15.92002 -15.48967 -14.75237 -14.49431 -14.09224 -13.62905 -13.04107 -12.69673 -12.50919 -12.33443 -12.20504 -12.15142 -11.82004 -11.46726 -11.03552 -10.89816 -10.75653 -10.61759 -10.44991 -10.01672 -9.61600 -9.26207 -9.13397 -9.02888 -8.36442 -6.01849 -4.04608 3.29598 3.37236 3.40998 3.77713 3.90608 4.44176 4.77379 4.89648 5.09233 5.14710 5.33946 5.43760 5.47403 5.59561 5.61401 5.67600 5.71291 5.77850 5.91095 6.11758 6.15358 6.28092 6.37281 6.59591 6.79171 7.02658 7.15842 7.44655 7.64745 7.77735 7.97460 8.39877 9.02690 9.59812 11.09414 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.067014 B = 0.006078 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.722458 B = 4605.430277 C = 4735.299049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.264 3.736 3 C -0.206 4.206 4 O -0.392 6.392 5 C 0.060 3.940 6 C -0.154 4.154 7 C -0.103 4.103 8 C 0.020 3.980 9 C -0.522 4.522 10 H 0.055 0.945 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.062 3.938 18 O -0.390 6.390 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.017 0.983 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.108 0.892 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.078 8.239 6.167 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.187 3.813 3 C -0.264 4.264 4 O -0.313 6.313 5 C -0.016 4.016 6 C -0.173 4.173 7 C -0.141 4.141 8 C -0.017 4.017 9 C -0.560 4.560 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.014 4.014 18 O -0.311 6.311 19 H 0.093 0.907 20 H 0.095 0.905 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.299 7.989 6.014 15.088 hybrid contribution 1.571 0.128 -0.109 1.580 sum -9.728 8.116 5.905 13.978 Atomic orbital electron populations 1.21577 0.90291 1.03755 1.02728 1.22638 0.94132 0.87814 0.76745 1.22839 1.02970 0.97209 1.03359 1.88069 1.22062 1.78413 1.42790 1.22813 0.79933 0.99828 0.99061 1.22439 0.99000 1.00992 0.94891 1.21581 0.90076 1.00837 1.01563 1.19139 0.95573 0.94873 0.92115 1.21288 0.91848 1.31094 1.11774 0.92668 1.25026 0.98471 0.95370 0.95570 1.69969 1.35357 1.32892 1.15183 0.86551 0.85875 0.77774 0.77892 1.19763 1.20997 1.21003 1.22864 0.79032 0.99896 0.99611 1.88112 1.22594 1.78159 1.42258 0.90682 0.90540 0.91048 0.91380 0.90762 0.90944 0.92948 0.88694 0.89819 0.93216 0.92751 0.96473 0.96381 0.93014 0.87428 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.21 37.16 0.34 -1.11 16 2 C 0.26 3.81 1.50 -26.73 -0.04 3.77 16 3 C -0.21 -2.50 8.11 37.16 0.30 -2.20 16 4 O -0.39 -6.24 10.35 -59.03 -0.61 -6.86 16 5 C 0.06 0.92 5.89 37.29 0.22 1.13 16 6 C -0.15 -2.74 2.59 -90.35 -0.23 -2.97 16 7 C -0.10 -2.07 4.63 -26.73 -0.12 -2.19 16 8 C 0.02 0.51 4.75 -27.89 -0.13 0.37 16 9 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 10 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 13 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.06 1.08 5.50 37.29 0.21 1.29 16 18 O -0.39 -6.68 10.35 -59.03 -0.61 -7.29 16 19 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 20 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.07 0.88 5.11 -51.93 -0.27 0.61 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.74 6.53 -51.92 -0.34 0.40 16 26 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.48 6.73 -51.93 -0.35 0.13 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.11 2.03 6.89 -51.93 -0.36 1.67 16 34 H 0.05 0.86 6.53 -51.93 -0.34 0.52 16 LS Contribution 270.85 15.07 4.08 4.08 Total: -1.00 -30.61 270.85 -6.72 -37.33 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.42 Total: -2.31 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 0.13 Total: -15.37 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.74 Total: -26.17 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -1.22 Total: -14.14 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.61 -6.72 -37.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260226431.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.639 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds