Wall clock time and date at job start Mon Mar 30 2020 02:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47186 * 2 1 4 4 C 1.53006 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.50369 * 58.86486 * 4 3 2 6 6 O 1.43745 * 109.63200 * 298.54658 * 4 3 2 7 7 C 1.44789 * 104.81266 * 215.80785 * 6 4 3 8 8 C 1.54911 * 101.72173 * 36.10463 * 7 6 4 9 9 H 1.09002 * 110.69765 * 82.83605 * 8 7 6 10 10 C 1.53004 * 110.69300 * 205.87091 * 8 7 6 11 11 C 1.50701 * 109.47054 * 182.62354 * 10 8 7 12 12 H 1.08009 * 119.99587 * 359.97438 * 11 10 8 13 13 C 1.37872 * 120.00237 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99646 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00122 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46981 * 59.99766 * 15 13 11 17 17 H 1.48500 * 109.47067 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47004 * 299.99430 * 15 13 11 19 19 O 1.43788 * 109.62029 * 179.12059 * 4 3 2 20 20 H 1.08997 * 109.47071 * 300.00302 * 1 2 3 21 21 H 1.09000 * 109.46495 * 60.00037 * 1 2 3 22 22 H 1.08995 * 109.47103 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47071 * 239.99698 * 2 1 3 24 24 H 1.08999 * 109.46877 * 119.99583 * 2 1 3 25 25 H 1.08997 * 109.47362 * 59.99876 * 3 2 1 26 26 H 1.08999 * 109.46872 * 299.99586 * 3 2 1 27 27 H 1.09001 * 109.47188 * 300.37641 * 5 4 3 28 28 H 1.08994 * 109.47507 * 60.38014 * 5 4 3 29 29 H 1.09001 * 109.46754 * 180.38461 * 5 4 3 30 30 H 1.09000 * 110.97677 * 277.99022 * 7 6 4 31 31 H 1.09011 * 110.97657 * 154.21009 * 7 6 4 32 32 H 1.09004 * 109.46794 * 302.61769 * 10 8 7 33 33 H 1.08991 * 109.47247 * 62.61961 * 10 8 7 34 34 H 0.97009 * 120.00084 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0814 0.6965 -1.2335 6 8 4.0525 0.7956 1.1902 7 6 5.2460 1.5307 1.5532 8 6 4.8543 2.9783 1.1648 9 1 4.2696 3.4451 1.9574 10 6 6.1000 3.8101 0.8528 11 6 5.6927 5.2273 0.5416 12 1 4.6496 5.5066 0.5638 13 6 6.6514 6.1671 0.2277 14 7 7.9215 5.8268 0.2003 15 14 6.1465 7.9235 -0.1587 16 1 5.4436 8.5056 1.0128 17 1 7.3555 8.7310 -0.4614 18 1 5.2390 7.9305 -1.3341 19 8 4.0530 2.7967 -0.0201 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.7128 -0.3291 -1.2168 28 1 3.7244 1.1963 -2.1340 29 1 5.1714 0.6910 -1.2289 30 1 6.1049 1.1902 0.9750 31 1 5.4419 1.4531 2.6228 32 1 6.7660 3.8047 1.7157 33 1 6.6160 3.3833 -0.0071 34 1 8.5962 6.4880 -0.0202 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260254373.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:22 Heat of formation + Delta-G solvation = -115.580923 kcal Electronic energy + Delta-G solvation = -14953.912819 eV Core-core repulsion = 12465.150605 eV Total energy + Delta-G solvation = -2488.762215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.01860 -35.29987 -34.39591 -33.09687 -31.26643 -29.29809 -26.81593 -26.25669 -23.19279 -22.22368 -20.54488 -19.95806 -16.74389 -16.16813 -15.91357 -15.29445 -14.69701 -14.16800 -13.95971 -13.37988 -13.33023 -12.49122 -12.39148 -12.12507 -11.90452 -11.88071 -11.66385 -11.53330 -11.19719 -11.03045 -10.87606 -10.57648 -10.48415 -10.40169 -9.67222 -9.50780 -9.11004 -8.79273 -8.37874 -6.00687 -4.01623 3.35699 3.39154 3.43025 3.99932 4.43312 4.47534 5.02593 5.06815 5.16090 5.34473 5.39057 5.41286 5.48707 5.62867 5.75252 5.77792 5.85114 5.93882 5.96335 6.04519 6.16567 6.22150 6.29860 6.44671 6.48406 6.52616 6.80201 7.42443 7.61057 7.88631 7.96838 8.37823 9.02167 9.61467 11.10939 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.044655 B = 0.007137 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.880525 B = 3922.258297 C = 4238.290612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.118 4.118 4 C 0.247 3.753 5 C -0.169 4.169 6 O -0.383 6.383 7 C 0.016 3.984 8 C 0.062 3.938 9 H 0.070 0.930 10 C 0.024 3.976 11 C -0.511 4.511 12 H 0.058 0.942 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 O -0.361 6.361 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.033 0.967 33 H 0.026 0.974 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 -10.569 0.095 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.156 4.156 4 C 0.170 3.830 5 C -0.227 4.227 6 O -0.304 6.304 7 C -0.060 4.060 8 C 0.005 3.995 9 H 0.088 0.912 10 C -0.013 4.013 11 C -0.549 4.549 12 H 0.076 0.924 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.723 3.277 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 O -0.282 6.282 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.357 -10.523 0.003 14.082 hybrid contribution 0.006 1.031 -0.196 1.050 sum -9.352 -9.492 -0.193 13.326 Atomic orbital electron populations 1.21774 0.96046 1.01255 1.01752 1.21518 0.95393 0.96429 1.02519 1.21880 0.93023 0.97457 1.03265 1.23335 0.92885 0.80914 0.85873 1.22385 1.02277 1.00229 0.97813 1.89112 1.41806 1.55479 1.43989 1.24537 0.88262 0.91504 1.01683 1.24045 0.94604 0.94180 0.86648 0.91160 1.19261 0.89781 0.94441 0.97831 1.21074 0.93347 0.93843 1.46670 0.92418 1.24993 0.94912 0.99018 0.95539 1.69944 0.99968 1.34574 1.49328 0.86604 0.77800 0.84366 0.78939 1.20247 1.21317 1.20196 1.89111 1.68403 1.26528 1.44164 0.92812 0.92848 0.92953 0.91807 0.91337 0.91174 0.90425 0.91262 0.91125 0.91936 0.91068 0.88272 0.94895 0.95526 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.12 -1.48 5.42 -26.73 -0.14 -1.62 16 3 C -0.12 -1.77 4.88 -26.73 -0.13 -1.90 16 4 C 0.25 4.36 1.15 -26.73 -0.03 4.33 16 5 C -0.17 -2.63 8.82 37.16 0.33 -2.30 16 6 O -0.38 -6.81 10.40 -59.00 -0.61 -7.43 16 7 C 0.02 0.29 7.36 38.17 0.28 0.57 16 8 C 0.06 1.35 3.59 -25.72 -0.09 1.25 16 9 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 10 C 0.02 0.62 4.74 -27.88 -0.13 0.48 16 11 C -0.51 -14.69 9.00 -34.44 -0.31 -15.00 16 12 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 15 Si 0.90 22.02 29.54 -169.99 -5.02 16.99 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 O -0.36 -7.93 10.48 -59.00 -0.62 -8.55 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.73 6.40 -51.93 -0.33 0.40 16 24 H 0.07 0.89 7.73 -51.93 -0.40 0.48 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.07 0.91 6.39 -51.93 -0.33 0.58 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 31 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 32 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 279.53 15.07 4.21 4.21 Total: -1.00 -30.62 279.53 -6.94 -37.56 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -5.67 Total: -2.75 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 0.04 Total: -13.82 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -1.23 Total: -15.98 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.62 -6.94 -37.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260254373.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.018 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds