Wall clock time and date at job start Mon Mar 30 2020 02:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47186 * 2 1 4 4 C 1.53006 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.50369 * 58.86486 * 4 3 2 6 6 O 1.43745 * 109.63200 * 298.54658 * 4 3 2 7 7 C 1.44789 * 104.81266 * 215.80785 * 6 4 3 8 8 C 1.54911 * 101.72173 * 36.10463 * 7 6 4 9 9 H 1.09002 * 110.69765 * 82.83605 * 8 7 6 10 10 C 1.53004 * 110.69300 * 205.87091 * 8 7 6 11 11 C 1.50701 * 109.47054 * 182.62354 * 10 8 7 12 12 H 1.08009 * 119.99587 * 359.97438 * 11 10 8 13 13 C 1.37872 * 120.00237 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99646 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00122 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46981 * 59.99766 * 15 13 11 17 17 H 1.48500 * 109.47067 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47004 * 299.99430 * 15 13 11 19 19 O 1.43788 * 109.62029 * 179.12059 * 4 3 2 20 20 H 1.08997 * 109.47071 * 300.00302 * 1 2 3 21 21 H 1.09000 * 109.46495 * 60.00037 * 1 2 3 22 22 H 1.08995 * 109.47103 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47071 * 239.99698 * 2 1 3 24 24 H 1.08999 * 109.46877 * 119.99583 * 2 1 3 25 25 H 1.08997 * 109.47362 * 59.99876 * 3 2 1 26 26 H 1.08999 * 109.46872 * 299.99586 * 3 2 1 27 27 H 1.09001 * 109.47188 * 300.37641 * 5 4 3 28 28 H 1.08994 * 109.47507 * 60.38014 * 5 4 3 29 29 H 1.09001 * 109.46754 * 180.38461 * 5 4 3 30 30 H 1.09000 * 110.97677 * 277.99022 * 7 6 4 31 31 H 1.09011 * 110.97657 * 154.21009 * 7 6 4 32 32 H 1.09004 * 109.46794 * 302.61769 * 10 8 7 33 33 H 1.08991 * 109.47247 * 62.61961 * 10 8 7 34 34 H 0.97009 * 120.00084 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0814 0.6965 -1.2335 6 8 4.0525 0.7956 1.1902 7 6 5.2460 1.5307 1.5532 8 6 4.8543 2.9783 1.1648 9 1 4.2696 3.4451 1.9574 10 6 6.1000 3.8101 0.8528 11 6 5.6927 5.2273 0.5416 12 1 4.6496 5.5066 0.5638 13 6 6.6514 6.1671 0.2277 14 7 7.9215 5.8268 0.2003 15 14 6.1465 7.9235 -0.1587 16 1 5.4436 8.5056 1.0128 17 1 7.3555 8.7310 -0.4614 18 1 5.2390 7.9305 -1.3341 19 8 4.0530 2.7967 -0.0201 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6767 1.9563 -0.8900 27 1 3.7128 -0.3291 -1.2168 28 1 3.7244 1.1963 -2.1340 29 1 5.1714 0.6910 -1.2289 30 1 6.1049 1.1902 0.9750 31 1 5.4419 1.4531 2.6228 32 1 6.7660 3.8047 1.7157 33 1 6.6160 3.3833 -0.0071 34 1 8.5962 6.4880 -0.0202 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260254373.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:22 Heat of formation + Delta-G solvation = -134.288446 kcal Electronic energy + Delta-G solvation = -14954.724039 eV Core-core repulsion = 12465.150605 eV Total energy + Delta-G solvation = -2489.573434 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.50942 -36.64903 -35.84831 -35.10146 -32.85106 -30.85903 -28.38312 -27.61753 -25.11097 -23.32555 -22.33691 -21.23940 -18.58856 -18.05867 -17.35272 -16.70513 -16.38897 -15.68882 -15.23692 -15.03520 -14.51588 -14.17035 -13.72700 -13.60151 -13.57801 -13.19771 -13.13349 -13.01487 -12.74342 -12.61060 -12.40392 -12.21611 -11.88784 -11.73130 -11.44928 -11.17650 -10.95682 -10.59975 -10.37344 -8.22102 -6.31281 1.38959 1.42061 1.50087 2.40226 2.54123 3.03289 3.14559 3.73565 3.85140 3.89293 4.05877 4.18074 4.26902 4.35276 4.51663 4.55347 4.69604 4.71585 4.77659 4.88478 4.96547 4.99872 5.08247 5.13569 5.29459 5.32244 5.39553 5.47711 5.55553 5.73703 6.16899 6.33477 6.79761 7.36277 8.89526 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.044655 B = 0.007137 C = 0.006605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.880525 B = 3922.258297 C = 4238.290612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.116 4.116 4 C 0.234 3.766 5 C -0.167 4.167 6 O -0.380 6.380 7 C 0.026 3.974 8 C 0.064 3.936 9 H 0.069 0.931 10 C 0.030 3.970 11 C -0.534 4.534 12 H 0.052 0.948 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.963 3.037 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.273 1.273 19 O -0.391 6.391 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.022 0.978 33 H -0.001 1.001 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.678 -11.024 -0.040 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.154 4.154 4 C 0.158 3.842 5 C -0.224 4.224 6 O -0.301 6.301 7 C -0.051 4.051 8 C 0.007 3.993 9 H 0.087 0.913 10 C -0.007 4.007 11 C -0.572 4.572 12 H 0.070 0.930 13 C -0.194 4.194 14 N -0.571 5.571 15 Si 0.788 3.212 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.198 1.198 19 O -0.313 6.313 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.041 0.959 33 H 0.017 0.983 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.652 -10.995 -0.127 15.309 hybrid contribution 0.406 1.139 -0.171 1.221 sum -10.246 -9.856 -0.298 14.220 Atomic orbital electron populations 1.21754 0.94400 1.02437 1.01969 1.21485 0.96787 0.94242 1.02713 1.21900 0.90966 0.99485 1.03000 1.23784 0.94562 0.79276 0.86582 1.22395 1.01439 1.01608 0.96988 1.89110 1.41607 1.55193 1.44176 1.24477 0.88308 0.88897 1.03375 1.23798 0.92916 0.95890 0.86701 0.91282 1.19080 0.91417 0.94111 0.96083 1.21426 0.93228 0.95499 1.47058 0.92978 1.25880 0.94849 1.03538 0.95160 1.70057 1.01000 1.36129 1.49916 0.85532 0.77739 0.78967 0.79010 1.19064 1.20420 1.19799 1.89062 1.68651 1.29323 1.44300 0.93009 0.92288 0.91297 0.90689 0.91991 0.92141 0.90042 0.88482 0.90651 0.93290 0.90986 0.85500 0.95947 0.98276 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.93 16 2 C -0.11 -2.53 5.42 30.60 0.17 -2.36 16 3 C -0.12 -3.29 4.88 30.60 0.15 -3.14 16 4 C 0.23 8.06 1.15 30.60 0.04 8.09 16 5 C -0.17 -4.96 8.82 71.98 0.63 -4.32 16 6 O -0.38 -12.99 10.40 -126.25 -1.31 -14.31 16 7 C 0.03 0.90 7.36 72.64 0.53 1.43 16 8 C 0.06 2.80 3.59 31.25 0.11 2.91 16 9 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 10 C 0.03 1.60 4.74 29.85 0.14 1.74 16 11 C -0.53 -31.23 9.00 25.60 0.23 -31.00 16 12 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 13 C 0.00 0.21 5.46 84.65 0.46 0.67 16 14 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 15 Si 0.96 45.17 29.54 68.60 2.03 47.19 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 19 O -0.39 -17.33 10.48 -126.25 -1.32 -18.65 16 20 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 21 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.48 6.40 -2.39 -0.02 1.47 16 24 H 0.06 1.46 7.73 -2.39 -0.02 1.44 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.10 2.30 6.39 -2.39 -0.02 2.29 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 2.52 8.05 -2.39 -0.02 2.50 16 31 H 0.13 3.72 8.14 -2.38 -0.02 3.70 16 32 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.00 -0.07 8.14 -2.39 -0.02 -0.08 16 34 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -65.40 279.53 3.90 -61.50 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.05 Total: 8.42 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 3.18 Total: -27.91 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.28 Total: -56.25 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -2.64 Total: -32.96 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -65.40 3.90 -61.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260254373.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.789 kcal (2) G-P(sol) polarization free energy of solvation -65.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds