Wall clock time and date at job start Mon Mar 30 2020 02:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47147 * 2 1 4 4 C 1.52995 * 109.47311 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.62877 * 305.38972 * 4 3 2 6 6 O 1.43748 * 109.63277 * 65.63375 * 4 3 2 7 7 C 1.44782 * 104.81550 * 144.19227 * 6 4 3 8 8 C 1.54916 * 101.72445 * 323.89815 * 7 6 4 9 9 H 1.08996 * 110.69607 * 277.16308 * 8 7 6 10 10 C 1.53001 * 110.69463 * 153.95672 * 8 7 6 11 11 C 1.50700 * 109.46861 * 179.89056 * 10 8 7 12 12 H 1.08008 * 120.00183 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00098 * 179.97438 * 11 10 8 14 14 N 1.31513 * 120.00054 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00147 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47160 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46917 * 119.99927 * 15 13 11 18 18 H 1.48494 * 109.47339 * 240.00274 * 15 13 11 19 19 O 1.43375 * 109.63219 * 185.00183 * 4 3 2 20 20 H 1.09006 * 109.46702 * 60.00471 * 1 2 3 21 21 H 1.09001 * 109.46770 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47192 * 299.99856 * 1 2 3 23 23 H 1.08997 * 109.46932 * 239.99710 * 2 1 3 24 24 H 1.09006 * 109.46702 * 119.99529 * 2 1 3 25 25 H 1.09006 * 109.47255 * 59.99470 * 3 2 1 26 26 H 1.09001 * 109.46996 * 299.99866 * 3 2 1 27 27 H 1.08999 * 109.47381 * 300.31222 * 5 4 3 28 28 H 1.09004 * 109.46770 * 60.30321 * 5 4 3 29 29 H 1.08998 * 109.47504 * 180.30769 * 5 4 3 30 30 H 1.08999 * 110.97885 * 82.00778 * 7 6 4 31 31 H 1.09000 * 110.97927 * 205.74917 * 7 6 4 32 32 H 1.08999 * 109.47311 * 299.88675 * 10 8 7 33 33 H 1.09001 * 109.46858 * 59.89343 * 10 8 7 34 34 H 0.97001 * 120.00129 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0835 0.6081 1.1758 6 8 4.0535 0.8837 -1.2324 7 6 5.2471 1.6432 -1.5401 8 6 4.8552 3.0588 -1.0478 9 1 4.2711 3.5819 -1.8050 10 6 6.1003 3.8643 -0.6712 11 6 5.6881 5.2350 -0.1997 12 1 4.6426 5.5045 -0.1710 13 6 6.6456 6.1446 0.1962 14 7 7.9186 5.8164 0.1618 15 14 6.1347 7.8439 0.7800 16 1 4.6556 7.9627 0.7239 17 1 6.5943 8.0460 2.1776 18 1 6.7481 8.8737 -0.0966 19 8 4.0516 2.7878 0.1184 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 1.6766 1.9563 0.8900 26 1 1.6767 1.9562 -0.8900 27 1 3.7166 1.0323 2.1104 28 1 3.7260 -0.4170 1.0772 29 1 5.1735 0.6143 1.1771 30 1 6.1057 1.2617 -0.9874 31 1 5.4444 1.6428 -2.6121 32 1 6.6370 3.3516 0.1270 33 1 6.7486 3.9594 -1.5423 34 1 8.5922 6.4562 0.4406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260254377.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:24 Heat of formation + Delta-G solvation = -115.401974 kcal Electronic energy + Delta-G solvation = -14961.196932 eV Core-core repulsion = 12472.442477 eV Total energy + Delta-G solvation = -2488.754455 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.04399 -35.31690 -34.40727 -33.09886 -31.25880 -29.28815 -26.81919 -26.26112 -23.19538 -22.25589 -20.55034 -19.93680 -16.74686 -16.18773 -15.91228 -15.28035 -14.69804 -14.17898 -13.96311 -13.38309 -13.33462 -12.50415 -12.39526 -12.09968 -11.89709 -11.88460 -11.65226 -11.53362 -11.21116 -11.04148 -10.87100 -10.54851 -10.50806 -10.38639 -9.67094 -9.50896 -9.08849 -8.78462 -8.38657 -6.01001 -4.01617 3.32735 3.40004 3.45822 4.00232 4.43607 4.47843 5.02475 5.07620 5.15513 5.34176 5.39065 5.42173 5.48824 5.62849 5.76034 5.77264 5.85336 5.94132 5.95952 6.05081 6.16570 6.22298 6.30391 6.43893 6.47878 6.52775 6.80484 7.42757 7.61251 7.89278 7.97223 8.37988 9.02891 9.61613 11.10757 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.044056 B = 0.007192 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.408169 B = 3892.394567 C = 4221.486148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.248 3.752 5 C -0.170 4.170 6 O -0.384 6.384 7 C 0.016 3.984 8 C 0.063 3.937 9 H 0.070 0.930 10 C 0.023 3.977 11 C -0.509 4.509 12 H 0.059 0.941 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 O -0.361 6.361 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.026 0.974 33 H 0.033 0.967 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.423 -10.495 -0.887 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.157 4.157 4 C 0.171 3.829 5 C -0.228 4.228 6 O -0.305 6.305 7 C -0.060 4.060 8 C 0.006 3.994 9 H 0.088 0.912 10 C -0.014 4.014 11 C -0.547 4.547 12 H 0.077 0.923 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 O -0.282 6.282 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.396 -10.458 -0.795 14.082 hybrid contribution 0.032 0.995 0.308 1.042 sum -9.365 -9.464 -0.487 13.323 Atomic orbital electron populations 1.21776 0.96039 1.01256 1.01760 1.21543 0.95429 0.96469 1.02487 1.21880 0.93047 0.97442 1.03283 1.23267 0.92863 0.81951 0.84840 1.22400 1.02271 0.99769 0.98313 1.89113 1.41753 1.58727 1.40905 1.24536 0.88268 0.91251 1.01968 1.24045 0.94520 0.94174 0.86642 0.91171 1.19274 0.89788 0.94721 0.97605 1.21144 0.93263 0.97315 1.42961 0.92275 1.24999 0.94908 0.98816 0.95818 1.69961 0.99866 1.35465 1.48552 0.86492 0.78778 0.84143 0.78364 1.19688 1.21020 1.21060 1.89021 1.68297 1.27265 1.43584 0.92820 0.92954 0.92827 0.91417 0.91720 0.90356 0.91178 0.91143 0.91230 0.91939 0.91068 0.88291 0.95548 0.94874 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.12 -1.48 5.34 -26.73 -0.14 -1.63 16 3 C -0.12 -1.78 4.90 -26.74 -0.13 -1.91 16 4 C 0.25 4.39 1.15 -26.73 -0.03 4.36 16 5 C -0.17 -2.64 8.68 37.16 0.32 -2.32 16 6 O -0.38 -6.85 10.57 -59.04 -0.62 -7.48 16 7 C 0.02 0.29 7.36 38.17 0.28 0.57 16 8 C 0.06 1.36 3.62 -25.72 -0.09 1.27 16 9 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 10 C 0.02 0.59 4.75 -27.88 -0.13 0.46 16 11 C -0.51 -14.60 8.95 -34.44 -0.31 -14.91 16 12 H 0.06 1.70 7.74 -52.48 -0.41 1.30 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 15 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 O -0.36 -7.93 10.40 -59.04 -0.61 -8.54 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 24 H 0.06 0.74 6.36 -51.93 -0.33 0.41 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.07 0.92 6.37 -51.93 -0.33 0.59 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 31 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 279.48 15.07 4.21 4.21 Total: -1.00 -30.68 279.48 -6.95 -37.63 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.68 Total: -2.81 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 0.04 Total: -13.78 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -1.24 Total: -16.02 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.68 -6.95 -37.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260254377.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.770 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds