Wall clock time and date at job start Mon Mar 30 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47147 * 2 1 4 4 C 1.52995 * 109.47311 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.62877 * 305.38972 * 4 3 2 6 6 O 1.43748 * 109.63277 * 65.63375 * 4 3 2 7 7 C 1.44782 * 104.81550 * 144.19227 * 6 4 3 8 8 C 1.54916 * 101.72445 * 323.89815 * 7 6 4 9 9 H 1.08996 * 110.69607 * 277.16308 * 8 7 6 10 10 C 1.53001 * 110.69463 * 153.95672 * 8 7 6 11 11 C 1.50700 * 109.46861 * 179.89056 * 10 8 7 12 12 H 1.08008 * 120.00183 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00098 * 179.97438 * 11 10 8 14 14 N 1.31513 * 120.00054 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00147 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47160 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46917 * 119.99927 * 15 13 11 18 18 H 1.48494 * 109.47339 * 240.00274 * 15 13 11 19 19 O 1.43375 * 109.63219 * 185.00183 * 4 3 2 20 20 H 1.09006 * 109.46702 * 60.00471 * 1 2 3 21 21 H 1.09001 * 109.46770 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47192 * 299.99856 * 1 2 3 23 23 H 1.08997 * 109.46932 * 239.99710 * 2 1 3 24 24 H 1.09006 * 109.46702 * 119.99529 * 2 1 3 25 25 H 1.09006 * 109.47255 * 59.99470 * 3 2 1 26 26 H 1.09001 * 109.46996 * 299.99866 * 3 2 1 27 27 H 1.08999 * 109.47381 * 300.31222 * 5 4 3 28 28 H 1.09004 * 109.46770 * 60.30321 * 5 4 3 29 29 H 1.08998 * 109.47504 * 180.30769 * 5 4 3 30 30 H 1.08999 * 110.97885 * 82.00778 * 7 6 4 31 31 H 1.09000 * 110.97927 * 205.74917 * 7 6 4 32 32 H 1.08999 * 109.47311 * 299.88675 * 10 8 7 33 33 H 1.09001 * 109.46858 * 59.89343 * 10 8 7 34 34 H 0.97001 * 120.00129 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0835 0.6081 1.1758 6 8 4.0535 0.8837 -1.2324 7 6 5.2471 1.6432 -1.5401 8 6 4.8552 3.0588 -1.0478 9 1 4.2711 3.5819 -1.8050 10 6 6.1003 3.8643 -0.6712 11 6 5.6881 5.2350 -0.1997 12 1 4.6426 5.5045 -0.1710 13 6 6.6456 6.1446 0.1962 14 7 7.9186 5.8164 0.1618 15 14 6.1347 7.8439 0.7800 16 1 4.6556 7.9627 0.7239 17 1 6.5943 8.0460 2.1776 18 1 6.7481 8.8737 -0.0966 19 8 4.0516 2.7878 0.1184 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8901 25 1 1.6766 1.9563 0.8900 26 1 1.6767 1.9562 -0.8900 27 1 3.7166 1.0323 2.1104 28 1 3.7260 -0.4170 1.0772 29 1 5.1735 0.6143 1.1771 30 1 6.1057 1.2617 -0.9874 31 1 5.4444 1.6428 -2.6121 32 1 6.6370 3.3516 0.1270 33 1 6.7486 3.9594 -1.5423 34 1 8.5922 6.4562 0.4406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260254377.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:23 Heat of formation + Delta-G solvation = -134.159155 kcal Electronic energy + Delta-G solvation = -14962.010305 eV Core-core repulsion = 12472.442477 eV Total energy + Delta-G solvation = -2489.567827 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.53609 -36.65849 -35.86751 -35.10370 -32.84868 -30.84168 -28.39070 -27.62389 -25.11297 -23.35823 -22.34442 -21.21452 -18.57342 -18.09779 -17.35204 -16.70845 -16.37113 -15.69781 -15.24936 -15.03313 -14.52284 -14.19353 -13.73163 -13.58292 -13.57476 -13.20797 -13.12784 -13.00144 -12.74373 -12.63692 -12.39251 -12.20842 -11.88711 -11.72224 -11.43785 -11.17331 -10.95350 -10.60836 -10.36509 -8.22420 -6.31198 1.38511 1.39352 1.52874 2.40113 2.54261 3.03590 3.14612 3.73528 3.85724 3.89232 4.05856 4.17678 4.27413 4.35905 4.51667 4.55261 4.69502 4.71381 4.77551 4.88778 4.96232 4.99820 5.08842 5.14472 5.29416 5.32327 5.39115 5.47275 5.55555 5.74051 6.17060 6.35207 6.80369 7.36464 8.89669 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.044056 B = 0.007192 C = 0.006631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.408169 B = 3892.394567 C = 4221.486148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.116 4.116 4 C 0.235 3.765 5 C -0.167 4.167 6 O -0.381 6.381 7 C 0.025 3.975 8 C 0.065 3.935 9 H 0.070 0.930 10 C 0.029 3.971 11 C -0.531 4.531 12 H 0.052 0.948 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.963 3.037 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.273 1.273 19 O -0.391 6.391 20 H 0.051 0.949 21 H 0.068 0.932 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.127 0.873 32 H -0.001 1.001 33 H 0.023 0.977 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.668 -10.971 -0.737 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.154 4.154 4 C 0.159 3.841 5 C -0.225 4.225 6 O -0.302 6.302 7 C -0.051 4.051 8 C 0.008 3.992 9 H 0.088 0.912 10 C -0.008 4.008 11 C -0.569 4.569 12 H 0.070 0.930 13 C -0.195 4.195 14 N -0.572 5.572 15 Si 0.788 3.212 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.199 1.199 19 O -0.313 6.313 20 H 0.070 0.930 21 H 0.087 0.913 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.018 0.982 33 H 0.041 0.959 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.651 -10.949 -0.651 15.289 hybrid contribution 0.422 1.111 0.273 1.219 sum -10.229 -9.838 -0.378 14.197 Atomic orbital electron populations 1.21757 0.94412 1.02445 1.01958 1.21510 0.96809 0.94252 1.02730 1.21898 0.90990 0.99505 1.02978 1.23717 0.94537 0.80401 0.85475 1.22409 1.01384 1.01011 0.97665 1.89109 1.41572 1.58449 1.41100 1.24476 0.88290 0.88756 1.03570 1.23803 0.92858 0.95858 0.86720 0.91231 1.19093 0.91399 0.94223 0.96044 1.21466 0.93045 0.98891 1.43465 0.93006 1.25878 0.94863 1.02976 0.95771 1.70066 1.00909 1.37011 1.49187 0.85422 0.78570 0.79154 0.78053 1.19207 1.20376 1.19882 1.88973 1.68548 1.29919 1.43844 0.92982 0.91275 0.92342 0.91946 0.90629 0.90144 0.92049 0.90640 0.88467 0.93341 0.91015 0.85486 0.98230 0.95931 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.91 71.98 0.71 -1.93 16 2 C -0.12 -2.54 5.34 30.59 0.16 -2.37 16 3 C -0.12 -3.31 4.90 30.59 0.15 -3.16 16 4 C 0.24 8.10 1.15 30.59 0.04 8.14 16 5 C -0.17 -4.99 8.68 71.98 0.62 -4.36 16 6 O -0.38 -13.08 10.57 -126.22 -1.33 -14.42 16 7 C 0.03 0.89 7.36 72.64 0.53 1.42 16 8 C 0.06 2.82 3.62 31.25 0.11 2.93 16 9 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 10 C 0.03 1.56 4.75 29.85 0.14 1.71 16 11 C -0.53 -31.02 8.95 25.60 0.23 -30.79 16 12 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 13 C 0.00 0.16 5.46 84.65 0.46 0.63 16 14 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 15 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 O -0.39 -17.31 10.40 -126.22 -1.31 -18.62 16 20 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 21 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 1.45 7.85 -2.39 -0.02 1.43 16 24 H 0.08 1.49 6.36 -2.38 -0.02 1.48 16 25 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.10 2.32 6.37 -2.38 -0.02 2.31 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 31 H 0.13 3.72 8.14 -2.39 -0.02 3.70 16 32 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -65.45 279.48 3.88 -61.57 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.05 Total: 8.21 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 3.17 Total: -27.79 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -2.65 Total: -33.03 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.45 3.88 -61.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260254377.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.584 kcal (2) G-P(sol) polarization free energy of solvation -65.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds