Wall clock time and date at job start Mon Mar 30 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.46999 * 2 1 4 4 C 1.52997 * 109.47252 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.62973 * 58.93947 * 4 3 2 6 6 O 1.43366 * 109.63364 * 298.54897 * 4 3 2 7 7 C 1.44196 * 107.29049 * 239.45290 * 6 4 3 8 8 C 1.54913 * 103.07481 * 338.55869 * 7 6 4 9 9 H 1.09001 * 110.98052 * 277.45288 * 8 7 6 10 10 C 1.53003 * 110.97728 * 153.67005 * 8 7 6 11 11 C 1.50705 * 109.46994 * 175.00196 * 10 8 7 12 12 H 1.07995 * 119.99911 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99695 * 180.02562 * 11 10 8 14 14 N 1.31515 * 120.00065 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99872 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47162 * 89.99957 * 15 13 11 17 17 H 1.48501 * 109.46962 * 209.99770 * 15 13 11 18 18 H 1.48500 * 109.47123 * 329.99951 * 15 13 11 19 19 O 1.43751 * 109.63628 * 179.18493 * 4 3 2 20 20 H 1.09005 * 109.47470 * 60.00219 * 1 2 3 21 21 H 1.09004 * 109.47303 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47620 * 300.00178 * 1 2 3 23 23 H 1.08999 * 109.47268 * 240.00509 * 2 1 3 24 24 H 1.09005 * 109.47470 * 119.99781 * 2 1 3 25 25 H 1.09005 * 109.47055 * 60.00436 * 3 2 1 26 26 H 1.09003 * 109.47338 * 300.00165 * 3 2 1 27 27 H 1.09001 * 109.47159 * 300.31163 * 5 4 3 28 28 H 1.09002 * 109.46780 * 60.30802 * 5 4 3 29 29 H 1.09002 * 109.47412 * 180.30553 * 5 4 3 30 30 H 1.08998 * 110.69882 * 96.95579 * 7 6 4 31 31 H 1.09003 * 110.69198 * 220.16833 * 7 6 4 32 32 H 1.08999 * 109.47138 * 295.00052 * 10 8 7 33 33 H 1.08998 * 109.46919 * 54.99973 * 10 8 7 34 34 H 0.96998 * 119.99973 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0844 0.6989 -1.2335 6 8 4.0511 0.7975 1.1871 7 6 4.8538 1.7586 1.9020 8 6 5.2461 2.7756 0.8012 9 1 6.1051 2.4217 0.2311 10 6 5.5214 4.1551 1.4029 11 6 6.0171 5.0837 0.3244 12 1 6.1246 4.7258 -0.6888 13 6 6.3334 6.3901 0.6314 14 7 6.2021 6.8260 1.8652 15 14 6.9472 7.5413 -0.7055 16 1 5.7918 8.2301 -1.3345 17 1 7.8601 8.5498 -0.1096 18 1 7.6778 6.7594 -1.7351 19 8 4.0529 2.7964 -0.0186 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8901 26 1 1.6765 1.9564 -0.8900 27 1 3.7180 -0.3276 -1.2182 28 1 3.7273 1.1987 -2.1340 29 1 5.1744 0.6958 -1.2277 30 1 4.2691 2.2435 2.6837 31 1 5.7408 1.2837 2.3213 32 1 4.6024 4.5544 1.8319 33 1 6.2780 4.0669 2.1826 34 1 6.4242 7.7452 2.0811 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260254380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:25 Heat of formation + Delta-G solvation = -116.229755 kcal Electronic energy + Delta-G solvation = -14938.361797 eV Core-core repulsion = 12449.571447 eV Total energy + Delta-G solvation = -2488.790350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.04560 -35.29640 -34.39378 -33.14697 -31.29394 -29.31945 -26.75271 -26.32579 -23.23661 -22.23979 -20.66469 -19.76135 -16.92645 -16.07516 -15.84672 -15.05500 -14.92330 -14.40109 -13.97405 -13.43564 -13.00492 -12.94897 -12.23872 -12.08231 -11.98233 -11.84346 -11.65927 -11.35084 -11.21810 -11.14383 -10.87082 -10.57840 -10.52360 -10.38143 -9.65962 -9.39342 -9.13210 -8.95810 -8.40122 -6.02801 -4.04210 3.32985 3.38690 3.42476 3.97742 4.43336 4.45741 5.03217 5.09823 5.18163 5.33479 5.34794 5.40776 5.52911 5.63495 5.73357 5.80180 5.83123 5.93553 5.97227 6.04109 6.19677 6.20740 6.29473 6.43571 6.46937 6.52248 6.77927 7.42619 7.57322 7.86491 7.93941 8.34177 8.99515 9.59111 11.08797 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045672 B = 0.006907 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.921936 B = 4053.145282 C = 4186.603793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.119 4.119 4 C 0.247 3.753 5 C -0.169 4.169 6 O -0.389 6.389 7 C 0.020 3.980 8 C 0.060 3.940 9 H 0.070 0.930 10 C 0.028 3.972 11 C -0.514 4.514 12 H 0.058 0.942 13 C 0.057 3.943 14 N -0.897 5.897 15 Si 0.895 3.105 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.356 6.356 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.479 -12.080 -2.801 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.157 4.157 4 C 0.169 3.831 5 C -0.227 4.227 6 O -0.311 6.311 7 C -0.056 4.056 8 C 0.003 3.997 9 H 0.088 0.912 10 C -0.009 4.009 11 C -0.552 4.552 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.723 3.277 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 O -0.277 6.277 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.594 -11.950 -2.750 13.923 hybrid contribution 0.491 0.784 -0.628 1.118 sum -6.103 -11.165 -3.378 13.165 Atomic orbital electron populations 1.21772 0.96006 1.01248 1.01795 1.21490 0.95383 0.96312 1.02504 1.21844 0.93010 0.97466 1.03344 1.23260 0.93028 0.80877 0.85891 1.22395 1.02086 1.00648 0.97571 1.88753 1.68886 1.37657 1.35775 1.24348 0.94873 0.90160 0.96237 1.24246 0.87119 0.99490 0.88857 0.91201 1.19173 0.97825 0.87599 0.96316 1.21112 1.43460 0.95518 0.95083 0.92406 1.24995 0.95742 0.98199 0.95498 1.69950 1.49021 1.16626 1.18062 0.86535 0.78697 0.80571 0.81870 1.20614 1.21234 1.19862 1.89375 1.42212 1.24941 1.71168 0.92862 0.92947 0.92757 0.91881 0.91286 0.91052 0.90622 0.91309 0.91060 0.92069 0.90971 0.89167 0.95247 0.94657 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.15 0.37 -1.20 16 2 C -0.12 -1.47 5.43 -26.73 -0.15 -1.62 16 3 C -0.12 -1.80 4.88 -26.73 -0.13 -1.93 16 4 C 0.25 4.34 1.14 -26.73 -0.03 4.31 16 5 C -0.17 -2.55 8.82 37.16 0.33 -2.22 16 6 O -0.39 -6.98 10.26 -59.04 -0.61 -7.58 16 7 C 0.02 0.37 7.54 38.17 0.29 0.65 16 8 C 0.06 1.29 3.37 -25.72 -0.09 1.20 16 9 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 10 C 0.03 0.72 4.75 -27.88 -0.13 0.58 16 11 C -0.51 -14.67 9.07 -34.44 -0.31 -14.99 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 15 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 O -0.36 -7.80 10.68 -59.04 -0.63 -8.43 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.72 6.41 -51.93 -0.33 0.39 16 24 H 0.07 0.90 7.73 -51.93 -0.40 0.50 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 0.89 6.41 -51.93 -0.33 0.55 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 279.65 15.07 4.21 4.21 Total: -1.00 -30.45 279.65 -6.93 -37.38 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.68 Total: -2.67 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 0.05 Total: -13.66 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.74 Total: -26.11 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -1.24 Total: -16.02 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.45 -6.93 -37.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260254380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.851 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds