Wall clock time and date at job start Mon Mar 30 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.46999 * 2 1 4 4 C 1.52997 * 109.47252 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.62973 * 58.93947 * 4 3 2 6 6 O 1.43366 * 109.63364 * 298.54897 * 4 3 2 7 7 C 1.44196 * 107.29049 * 239.45290 * 6 4 3 8 8 C 1.54913 * 103.07481 * 338.55869 * 7 6 4 9 9 H 1.09001 * 110.98052 * 277.45288 * 8 7 6 10 10 C 1.53003 * 110.97728 * 153.67005 * 8 7 6 11 11 C 1.50705 * 109.46994 * 175.00196 * 10 8 7 12 12 H 1.07995 * 119.99911 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99695 * 180.02562 * 11 10 8 14 14 N 1.31515 * 120.00065 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99872 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47162 * 89.99957 * 15 13 11 17 17 H 1.48501 * 109.46962 * 209.99770 * 15 13 11 18 18 H 1.48500 * 109.47123 * 329.99951 * 15 13 11 19 19 O 1.43751 * 109.63628 * 179.18493 * 4 3 2 20 20 H 1.09005 * 109.47470 * 60.00219 * 1 2 3 21 21 H 1.09004 * 109.47303 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47620 * 300.00178 * 1 2 3 23 23 H 1.08999 * 109.47268 * 240.00509 * 2 1 3 24 24 H 1.09005 * 109.47470 * 119.99781 * 2 1 3 25 25 H 1.09005 * 109.47055 * 60.00436 * 3 2 1 26 26 H 1.09003 * 109.47338 * 300.00165 * 3 2 1 27 27 H 1.09001 * 109.47159 * 300.31163 * 5 4 3 28 28 H 1.09002 * 109.46780 * 60.30802 * 5 4 3 29 29 H 1.09002 * 109.47412 * 180.30553 * 5 4 3 30 30 H 1.08998 * 110.69882 * 96.95579 * 7 6 4 31 31 H 1.09003 * 110.69198 * 220.16833 * 7 6 4 32 32 H 1.08999 * 109.47138 * 295.00052 * 10 8 7 33 33 H 1.08998 * 109.46919 * 54.99973 * 10 8 7 34 34 H 0.96998 * 119.99973 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0844 0.6989 -1.2335 6 8 4.0511 0.7975 1.1871 7 6 4.8538 1.7586 1.9020 8 6 5.2461 2.7756 0.8012 9 1 6.1051 2.4217 0.2311 10 6 5.5214 4.1551 1.4029 11 6 6.0171 5.0837 0.3244 12 1 6.1246 4.7258 -0.6888 13 6 6.3334 6.3901 0.6314 14 7 6.2021 6.8260 1.8652 15 14 6.9472 7.5413 -0.7055 16 1 5.7918 8.2301 -1.3345 17 1 7.8601 8.5498 -0.1096 18 1 7.6778 6.7594 -1.7351 19 8 4.0529 2.7964 -0.0186 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 0.8901 26 1 1.6765 1.9564 -0.8900 27 1 3.7180 -0.3276 -1.2182 28 1 3.7273 1.1987 -2.1340 29 1 5.1744 0.6958 -1.2277 30 1 4.2691 2.2435 2.6837 31 1 5.7408 1.2837 2.3213 32 1 4.6024 4.5544 1.8319 33 1 6.2780 4.0669 2.1826 34 1 6.4242 7.7452 2.0811 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260254380.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:25 Heat of formation + Delta-G solvation = -134.784389 kcal Electronic energy + Delta-G solvation = -14939.166387 eV Core-core repulsion = 12449.571447 eV Total energy + Delta-G solvation = -2489.594939 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.53813 -36.65108 -35.84665 -35.14173 -32.88088 -30.87214 -28.32214 -27.67726 -25.15085 -23.35948 -22.40268 -21.08175 -18.75401 -17.99283 -17.32962 -16.60968 -16.21804 -16.07794 -15.40060 -14.76847 -14.61065 -14.11812 -13.87024 -13.82764 -13.40495 -13.12907 -13.10471 -12.95065 -12.69535 -12.55211 -12.47891 -12.32742 -11.91848 -11.62232 -11.47530 -11.16824 -10.94167 -10.62015 -10.44300 -8.23132 -6.32869 1.39185 1.40800 1.51770 2.39666 2.51478 3.03042 3.13883 3.72230 3.86146 3.89021 4.06851 4.18717 4.26175 4.33370 4.53199 4.55974 4.68131 4.71418 4.78171 4.89377 4.96778 4.98999 5.07829 5.13375 5.27657 5.32081 5.40090 5.46783 5.53352 5.72779 6.15211 6.30177 6.78326 7.35028 8.88815 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045672 B = 0.006907 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.921936 B = 4053.145282 C = 4186.603793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.118 4.118 4 C 0.234 3.766 5 C -0.165 4.165 6 O -0.388 6.388 7 C 0.028 3.972 8 C 0.063 3.937 9 H 0.073 0.927 10 C 0.033 3.967 11 C -0.535 4.535 12 H 0.054 0.946 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.965 3.035 16 H -0.276 1.276 17 H -0.278 1.278 18 H -0.264 1.264 19 O -0.387 6.387 20 H 0.058 0.942 21 H 0.069 0.931 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.118 0.882 32 H -0.002 1.002 33 H 0.025 0.975 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 -13.126 -4.013 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.156 4.156 4 C 0.158 3.842 5 C -0.223 4.223 6 O -0.309 6.309 7 C -0.048 4.048 8 C 0.006 3.994 9 H 0.091 0.909 10 C -0.004 4.004 11 C -0.573 4.573 12 H 0.072 0.928 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.789 3.211 16 H -0.201 1.201 17 H -0.203 1.203 18 H -0.188 1.188 19 O -0.309 6.309 20 H 0.077 0.923 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.017 0.983 33 H 0.043 0.957 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.781 -13.016 -3.964 15.202 hybrid contribution 0.507 1.096 -0.232 1.229 sum -6.274 -11.920 -4.196 14.109 Atomic orbital electron populations 1.21758 0.94463 1.02469 1.01910 1.21457 0.96692 0.94031 1.02804 1.21894 0.91395 0.99532 1.02787 1.23728 0.94445 0.79355 0.86706 1.22384 1.01681 1.01804 0.96386 1.88744 1.68860 1.37277 1.36030 1.24278 0.95885 0.89603 0.95012 1.23985 0.87631 0.97736 0.90037 0.90873 1.18986 0.95819 0.89904 0.95676 1.21463 1.43801 0.96555 0.95507 0.92752 1.25902 0.95762 0.99919 0.97903 1.70065 1.49757 1.17245 1.20049 0.85448 0.78302 0.78333 0.78977 1.20143 1.20288 1.18830 1.89328 1.42217 1.27980 1.71363 0.92259 0.91168 0.93212 0.90447 0.92015 0.92663 0.90193 0.88733 0.90332 0.92733 0.91392 0.86373 0.98321 0.95659 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.91 71.98 0.71 -2.03 16 2 C -0.11 -2.52 5.43 30.59 0.17 -2.35 16 3 C -0.12 -3.46 4.88 30.59 0.15 -3.31 16 4 C 0.23 8.01 1.14 30.59 0.03 8.04 16 5 C -0.17 -4.64 8.82 71.98 0.63 -4.00 16 6 O -0.39 -13.39 10.26 -126.22 -1.30 -14.68 16 7 C 0.03 1.02 7.54 72.64 0.55 1.57 16 8 C 0.06 2.74 3.37 31.25 0.11 2.84 16 9 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 10 C 0.03 1.77 4.75 29.85 0.14 1.91 16 11 C -0.54 -31.08 9.07 25.60 0.23 -30.85 16 12 H 0.05 3.12 7.74 -2.91 -0.02 3.09 16 13 C 0.00 0.18 5.46 84.65 0.46 0.64 16 14 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 15 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 19 O -0.39 -17.07 10.68 -126.22 -1.35 -18.42 16 20 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 21 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.08 1.51 6.41 -2.39 -0.02 1.50 16 24 H 0.06 1.48 7.73 -2.38 -0.02 1.46 16 25 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.09 2.14 6.41 -2.39 -0.02 2.13 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.48 8.03 -2.39 -0.02 2.46 16 31 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 32 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -65.14 279.65 3.90 -61.24 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.05 Total: 8.70 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: 3.19 Total: -27.54 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.28 Total: -56.22 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -2.64 Total: -33.10 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.14 3.90 -61.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260254380.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.547 kcal (2) G-P(sol) polarization free energy of solvation -65.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds