Wall clock time and date at job start Mon Mar 30 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47272 * 2 1 4 4 C 1.52995 * 109.47066 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.51253 * 305.32151 * 4 3 2 6 6 O 1.43376 * 109.62909 * 65.64057 * 4 3 2 7 7 C 1.44194 * 107.28678 * 120.54420 * 6 4 3 8 8 C 1.54914 * 103.07738 * 21.43857 * 7 6 4 9 9 H 1.08994 * 111.01315 * 82.55903 * 8 7 6 10 10 C 1.52998 * 110.97651 * 206.33048 * 8 7 6 11 11 C 1.50696 * 109.47188 * 178.79047 * 10 8 7 12 12 H 1.07995 * 120.00332 * 359.97438 * 11 10 8 13 13 C 1.37880 * 119.99983 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00019 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 O 1.43755 * 109.63172 * 184.99869 * 4 3 2 20 20 H 1.08994 * 109.46781 * 59.99664 * 1 2 3 21 21 H 1.08997 * 109.47085 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46908 * 300.00026 * 1 2 3 23 23 H 1.09003 * 109.46942 * 240.00522 * 2 1 3 24 24 H 1.08998 * 109.47256 * 120.00473 * 2 1 3 25 25 H 1.09003 * 109.46711 * 60.00381 * 3 2 1 26 26 H 1.08998 * 109.47366 * 300.00405 * 3 2 1 27 27 H 1.08991 * 109.46877 * 300.38476 * 5 4 3 28 28 H 1.09000 * 109.46442 * 60.38068 * 5 4 3 29 29 H 1.09001 * 109.46896 * 180.38143 * 5 4 3 30 30 H 1.08998 * 110.69468 * 263.04091 * 7 6 4 31 31 H 1.08999 * 110.69106 * 139.83583 * 7 6 4 32 32 H 1.09004 * 109.47223 * 58.78388 * 10 8 7 33 33 H 1.09010 * 109.47071 * 298.78740 * 10 8 7 34 34 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0806 0.6088 1.1777 6 8 4.0522 0.8852 -1.2293 7 6 4.8555 1.8958 -1.8717 8 6 5.2469 2.8300 -0.6995 9 1 6.1055 2.4361 -0.1558 10 6 5.5226 4.2496 -1.1991 11 6 5.8705 5.1348 -0.0302 12 1 5.8923 4.7259 0.9691 13 6 6.1599 6.4670 -0.2364 14 7 6.1329 6.9651 -1.4533 15 14 6.5904 7.5644 1.2126 16 1 5.3507 8.1742 1.7571 17 1 7.2487 6.7542 2.2688 18 1 7.5140 8.6372 0.7639 19 8 4.0530 2.7913 0.1186 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.6768 1.9563 0.8901 26 1 1.6767 1.9564 -0.8899 27 1 3.7116 1.0339 2.1110 28 1 3.7231 -0.4162 1.0789 29 1 5.1706 0.6148 1.1814 30 1 4.2713 2.4363 -2.6165 31 1 5.7427 1.4526 -2.3239 32 1 4.6346 4.6382 -1.6977 33 1 6.3556 4.2320 -1.9021 34 1 5.9098 6.3951 -2.2058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260254382.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:27 Heat of formation + Delta-G solvation = -119.258420 kcal Electronic energy + Delta-G solvation = -14984.598779 eV Core-core repulsion = 12495.677096 eV Total energy + Delta-G solvation = -2488.921683 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.13170 -35.40785 -34.50031 -33.43164 -31.27453 -29.22816 -26.73887 -26.12552 -23.10131 -22.33502 -20.91770 -19.83605 -17.09903 -16.53839 -15.88654 -15.12059 -14.91929 -14.08562 -13.73424 -13.55001 -13.07047 -13.06168 -12.75963 -12.17570 -12.00137 -11.92699 -11.65127 -11.44195 -11.23437 -11.00966 -10.92948 -10.57689 -10.47617 -10.17465 -9.97327 -9.50543 -9.06592 -8.58454 -8.34773 -6.37050 -4.05329 3.45572 3.48801 3.64824 3.89493 4.36434 4.54964 4.98443 5.03617 5.13036 5.23769 5.34821 5.40706 5.47436 5.52503 5.67927 5.73713 5.75001 5.88424 5.92288 5.99293 6.11047 6.15390 6.23702 6.31048 6.40542 6.45529 6.63990 7.11520 7.30743 7.72668 8.15309 8.46573 8.86365 9.64649 11.03676 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.043384 B = 0.007100 C = 0.006785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.249387 B = 3942.699288 C = 4125.498461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.119 4.119 4 C 0.246 3.754 5 C -0.170 4.170 6 O -0.388 6.388 7 C 0.020 3.980 8 C 0.067 3.933 9 H 0.071 0.929 10 C 0.014 3.986 11 C -0.592 4.592 12 H 0.052 0.948 13 C 0.014 3.986 14 N -0.914 5.914 15 Si 1.073 2.927 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.284 1.284 19 O -0.353 6.353 20 H 0.053 0.947 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.019 0.981 33 H 0.025 0.975 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.401 -12.787 2.362 14.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.157 4.157 4 C 0.169 3.831 5 C -0.227 4.227 6 O -0.310 6.310 7 C -0.057 4.057 8 C 0.010 3.990 9 H 0.089 0.911 10 C -0.023 4.023 11 C -0.630 4.630 12 H 0.071 0.929 13 C -0.189 4.189 14 N -0.551 5.551 15 Si 0.902 3.098 16 H -0.214 1.214 17 H -0.215 1.215 18 H -0.210 1.210 19 O -0.273 6.273 20 H 0.072 0.928 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.126 -11.271 2.837 13.138 hybrid contribution -0.298 -1.551 -0.470 1.648 sum -6.423 -12.822 2.367 14.535 Atomic orbital electron populations 1.21772 0.95933 1.01293 1.01829 1.21520 0.95490 0.96267 1.02483 1.21846 0.92918 0.97521 1.03387 1.23293 0.93116 0.81842 0.84883 1.22401 1.02072 1.00247 0.97988 1.88762 1.68792 1.38704 1.34709 1.24348 0.94901 0.89538 0.96885 1.24023 0.87380 0.99353 0.88244 0.91142 1.19293 0.96669 0.88790 0.97516 1.21935 1.50882 0.96445 0.93760 0.92930 1.25861 0.94447 0.96713 1.01886 1.70777 1.45763 1.39360 0.99180 0.83478 0.76750 0.75432 0.74163 1.21426 1.21474 1.21020 1.89394 1.41963 1.26357 1.69615 0.92776 0.92895 0.92795 0.91384 0.91743 0.90487 0.91112 0.90977 0.91155 0.92114 0.91082 0.89135 0.96280 0.95661 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.12 -1.47 5.34 -26.73 -0.14 -1.61 16 3 C -0.12 -1.81 4.90 -26.73 -0.13 -1.94 16 4 C 0.25 4.36 1.15 -26.73 -0.03 4.33 16 5 C -0.17 -2.56 8.68 37.16 0.32 -2.24 16 6 O -0.39 -6.98 10.44 -59.04 -0.62 -7.60 16 7 C 0.02 0.36 7.54 38.17 0.29 0.64 16 8 C 0.07 1.46 3.42 -25.72 -0.09 1.37 16 9 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 10 C 0.01 0.36 4.08 -27.89 -0.11 0.25 16 11 C -0.59 -17.18 8.96 -34.44 -0.31 -17.49 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 14 N -0.91 -28.13 13.65 55.43 0.76 -27.37 16 15 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 O -0.35 -7.82 10.57 -59.04 -0.62 -8.45 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 24 H 0.06 0.73 6.35 -51.93 -0.33 0.40 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.90 6.37 -51.93 -0.33 0.57 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.28 8.03 -51.93 -0.42 0.87 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.02 0.52 8.01 -51.93 -0.42 0.10 16 33 H 0.03 0.65 8.01 -51.92 -0.42 0.24 16 34 H 0.27 8.13 7.22 -40.82 -0.29 7.84 16 LS Contribution 278.20 15.07 4.19 4.19 Total: -1.00 -31.42 278.20 -6.93 -38.34 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.62 Total: -2.29 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 0.07 Total: -17.56 kcal Atomic # 7 Polarization: -28.13 SS G_CDS: 0.76 Total: -27.37 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -1.24 Total: -16.05 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.42 -6.93 -38.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260254382.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.915 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds