Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.47187 * 2 1 4 4 C 1.34638 * 116.99819 * 179.97438 * 3 2 1 5 5 O 1.21513 * 120.00208 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99834 * 179.72501 * 4 3 2 7 7 C 1.47067 * 136.05683 * 359.91490 * 6 4 3 8 8 C 1.53752 * 87.88704 * 152.95865 * 7 6 4 9 9 N 1.46504 * 114.39256 * 272.67069 * 8 7 6 10 10 C 1.36936 * 120.00081 * 248.58799 * 9 8 7 11 11 H 1.08002 * 120.00032 * 0.02562 * 10 9 8 12 12 C 1.38816 * 120.00064 * 180.02562 * 10 9 8 13 13 N 1.31619 * 119.99795 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99995 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46805 * 90.00274 * 14 12 10 16 16 H 1.48500 * 109.47143 * 210.00086 * 14 12 10 17 17 H 1.48503 * 109.47221 * 330.00301 * 14 12 10 18 18 C 1.47062 * 136.05657 * 180.27266 * 6 4 3 19 19 H 1.08999 * 109.47303 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.46990 * 300.00104 * 1 2 3 21 21 H 1.08997 * 109.47042 * 59.99813 * 1 2 3 22 22 H 1.09003 * 109.46990 * 239.99896 * 2 1 3 23 23 H 1.08997 * 109.47042 * 120.00187 * 2 1 3 24 24 H 1.09007 * 113.46523 * 267.69131 * 7 6 4 25 25 H 1.09001 * 113.47129 * 38.12710 * 7 6 4 26 26 H 1.09011 * 114.26601 * 139.79304 * 8 7 6 27 27 H 0.96994 * 119.99783 * 68.59020 * 9 8 7 28 28 H 0.96994 * 119.99501 * 179.97438 * 13 12 10 29 29 H 1.09000 * 113.47409 * 321.87078 * 18 6 4 30 30 H 1.09006 * 113.46707 * 92.25431 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5817 0.0005 6 7 3.8640 2.7907 -0.0050 7 6 3.3257 4.1593 -0.0138 8 6 4.6183 4.6113 0.6854 9 7 4.5810 4.5153 2.1468 10 6 4.5766 5.6537 2.9079 11 1 4.6002 6.6223 2.4308 12 6 4.5418 5.5627 4.2926 13 7 4.5136 4.3822 4.8740 14 14 4.5365 7.1157 5.3308 15 1 3.1355 7.5450 5.5720 16 1 5.2018 6.8445 6.6304 17 1 5.2680 8.1920 4.6153 18 6 5.2117 3.3791 -0.0114 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 3.2067 4.5725 -1.0155 25 1 2.4333 4.2788 0.6007 26 1 5.0132 5.5616 0.3260 27 1 4.5595 3.6454 2.5752 28 1 4.4897 4.3187 5.8416 29 1 5.9264 2.8340 0.6052 30 1 5.5905 3.5857 -1.0124 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260273308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = -28.174636 kcal Electronic energy + Delta-G solvation = -14314.614195 eV Core-core repulsion = 11726.101858 eV Total energy + Delta-G solvation = -2588.512337 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.17058 -38.55665 -35.89678 -33.71908 -31.69662 -30.61086 -28.10534 -25.49380 -23.95844 -22.99063 -21.14761 -19.27468 -17.73136 -17.24543 -16.54224 -16.37044 -15.16426 -14.51098 -14.09542 -13.71557 -13.53251 -13.02134 -12.70793 -12.61575 -12.27831 -11.74850 -11.50247 -11.18899 -10.99187 -10.92228 -10.39713 -10.29534 -10.20810 -10.00564 -9.86889 -9.02334 -8.32754 -7.13589 -5.87345 -3.19689 2.38139 3.25974 3.38698 3.43538 3.45980 4.22096 4.48504 5.01021 5.06230 5.08670 5.28575 5.35447 5.52664 5.64309 5.68562 5.81279 5.84415 5.95950 5.99301 6.08423 6.14548 6.36508 6.66461 6.74462 7.60733 8.17626 8.29186 8.68581 9.40716 9.94069 10.28675 11.34128 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.036767 B = 0.007157 C = 0.006574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.359572 B = 3911.416232 C = 4257.996617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 O -0.369 6.369 4 C 0.675 3.325 5 O -0.587 6.587 6 N -0.622 5.622 7 C 0.060 3.940 8 C 0.159 3.841 9 N -0.695 5.695 10 C -0.255 4.255 11 H 0.077 0.923 12 C -0.007 4.007 13 N -0.926 5.926 14 Si 0.913 3.087 15 H -0.288 1.288 16 H -0.291 1.291 17 H -0.279 1.279 18 C 0.104 3.896 19 H 0.078 0.922 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.389 0.611 28 H 0.258 0.742 29 H 0.079 0.921 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.944 -3.130 -10.743 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.007 3.993 3 O -0.283 6.283 4 C 0.431 3.569 5 O -0.477 6.477 6 N -0.363 5.363 7 C -0.067 4.067 8 C 0.044 3.956 9 N -0.332 5.332 10 C -0.385 4.385 11 H 0.095 0.905 12 C -0.204 4.204 13 N -0.573 5.573 14 Si 0.743 3.257 15 H -0.215 1.215 16 H -0.217 1.217 17 H -0.205 1.205 18 C -0.019 4.019 19 H 0.097 0.903 20 H 0.087 0.913 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.223 0.777 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.848 -3.527 -10.586 12.165 hybrid contribution -0.162 0.186 0.672 0.716 sum -5.009 -3.340 -9.914 11.599 Atomic orbital electron populations 1.21808 0.92868 1.02668 1.03515 1.22862 0.94582 0.79394 1.02440 1.86254 1.22454 1.32381 1.87233 1.17329 0.80734 0.82542 0.76248 1.90945 1.60063 1.39021 1.57706 1.48074 1.11428 1.02347 1.74444 1.24368 1.03032 0.78899 1.00383 1.21514 0.92549 0.95251 0.86314 1.42168 1.85864 1.07237 0.97946 1.19287 1.44381 0.86485 0.88375 0.90504 1.24843 1.02005 0.96876 0.96720 1.69689 1.56152 1.21923 1.09517 0.86121 0.77608 0.82112 0.79863 1.21545 1.21695 1.20489 1.23811 0.84328 0.93176 1.00609 0.90287 0.91347 0.91709 0.91639 0.91304 0.90709 0.90270 0.88756 0.77669 0.93203 0.90268 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.16 0.38 -1.20 16 2 C 0.08 1.16 6.19 37.16 0.23 1.39 16 3 O -0.37 -6.71 10.25 -40.32 -0.41 -7.12 16 4 C 0.68 13.85 8.96 54.06 0.48 14.33 16 5 O -0.59 -13.31 16.91 -19.28 -0.33 -13.64 16 6 N -0.62 -11.81 3.69 -190.94 -0.70 -12.51 16 7 C 0.06 1.02 8.48 -8.37 -0.07 0.95 16 8 C 0.16 2.93 4.84 -67.68 -0.33 2.60 16 9 N -0.70 -17.03 5.44 -53.10 -0.29 -17.32 16 10 C -0.25 -6.77 9.97 -15.06 -0.15 -6.92 16 11 H 0.08 1.92 7.83 -52.49 -0.41 1.50 16 12 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 13 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 14 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.10 1.77 8.38 -8.51 -0.07 1.69 16 19 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.09 1.54 8.11 -51.92 -0.42 1.12 16 27 H 0.39 10.63 7.96 -40.82 -0.32 10.30 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 268.30 15.07 4.04 4.04 Total: -1.00 -32.50 268.30 -5.70 -38.20 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.10 Total: 6.20 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 0.38 Total: 12.55 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.27 Total: -56.89 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.74 Total: -20.77 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.50 -5.70 -38.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260273308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.028 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds