Wall clock time and date at job start Mon Mar 30 2020 02:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.47187 * 2 1 4 4 C 1.34638 * 116.99819 * 179.97438 * 3 2 1 5 5 O 1.21513 * 120.00208 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99834 * 179.72501 * 4 3 2 7 7 C 1.47067 * 136.05683 * 359.91490 * 6 4 3 8 8 C 1.53752 * 87.88704 * 152.95865 * 7 6 4 9 9 N 1.46504 * 114.39256 * 272.67069 * 8 7 6 10 10 C 1.36936 * 120.00081 * 248.58799 * 9 8 7 11 11 H 1.08002 * 120.00032 * 0.02562 * 10 9 8 12 12 C 1.38816 * 120.00064 * 180.02562 * 10 9 8 13 13 N 1.31619 * 119.99795 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99995 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46805 * 90.00274 * 14 12 10 16 16 H 1.48500 * 109.47143 * 210.00086 * 14 12 10 17 17 H 1.48503 * 109.47221 * 330.00301 * 14 12 10 18 18 C 1.47062 * 136.05657 * 180.27266 * 6 4 3 19 19 H 1.08999 * 109.47303 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.46990 * 300.00104 * 1 2 3 21 21 H 1.08997 * 109.47042 * 59.99813 * 1 2 3 22 22 H 1.09003 * 109.46990 * 239.99896 * 2 1 3 23 23 H 1.08997 * 109.47042 * 120.00187 * 2 1 3 24 24 H 1.09007 * 113.46523 * 267.69131 * 7 6 4 25 25 H 1.09001 * 113.47129 * 38.12710 * 7 6 4 26 26 H 1.09011 * 114.26601 * 139.79304 * 8 7 6 27 27 H 0.96994 * 119.99783 * 68.59020 * 9 8 7 28 28 H 0.96994 * 119.99501 * 179.97438 * 13 12 10 29 29 H 1.09000 * 113.47409 * 321.87078 * 18 6 4 30 30 H 1.09006 * 113.46707 * 92.25431 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5817 0.0005 6 7 3.8640 2.7907 -0.0050 7 6 3.3257 4.1593 -0.0138 8 6 4.6183 4.6113 0.6854 9 7 4.5810 4.5153 2.1468 10 6 4.5766 5.6537 2.9079 11 1 4.6002 6.6223 2.4308 12 6 4.5418 5.5627 4.2926 13 7 4.5136 4.3822 4.8740 14 14 4.5365 7.1157 5.3308 15 1 3.1355 7.5450 5.5720 16 1 5.2018 6.8445 6.6304 17 1 5.2680 8.1920 4.6153 18 6 5.2117 3.3791 -0.0114 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 3.2067 4.5725 -1.0155 25 1 2.4333 4.2788 0.6007 26 1 5.0132 5.5616 0.3260 27 1 4.5595 3.6454 2.5752 28 1 4.4897 4.3187 5.8416 29 1 5.9264 2.8340 0.6052 30 1 5.5905 3.5857 -1.0124 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260273308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:28 Heat of formation + Delta-G solvation = -52.007045 kcal Electronic energy + Delta-G solvation = -14315.647645 eV Core-core repulsion = 11726.101858 eV Total energy + Delta-G solvation = -2589.545788 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.65309 -40.01535 -37.40707 -35.62723 -32.96056 -32.31186 -29.70726 -26.87311 -25.88213 -24.17222 -22.62410 -20.75940 -19.45991 -18.90389 -18.03398 -17.79464 -16.82213 -16.11637 -15.51717 -15.34691 -15.13438 -14.45050 -14.30304 -13.68635 -13.53003 -13.00515 -12.86699 -12.80931 -12.75385 -12.52030 -12.11196 -11.93753 -11.83439 -11.57822 -11.56471 -10.93398 -9.79826 -9.09552 -7.95697 -5.27918 1.02112 1.51569 1.53249 1.61906 1.70709 2.56027 2.89340 3.32722 3.72404 3.86946 3.97807 4.07285 4.21933 4.30832 4.41614 4.54743 4.61461 4.73786 4.81445 4.88848 4.97745 5.09432 5.22157 5.39806 5.55831 6.23888 6.69123 7.16229 7.29567 8.00790 8.24289 9.27783 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.036767 B = 0.007157 C = 0.006574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.359572 B = 3911.416232 C = 4257.996617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.071 3.929 3 O -0.376 6.376 4 C 0.665 3.335 5 O -0.619 6.619 6 N -0.632 5.632 7 C 0.076 3.924 8 C 0.147 3.853 9 N -0.717 5.717 10 C -0.243 4.243 11 H 0.097 0.903 12 C -0.079 4.079 13 N -0.975 5.975 14 Si 0.980 3.020 15 H -0.289 1.289 16 H -0.303 1.303 17 H -0.259 1.259 18 C 0.111 3.889 19 H 0.109 0.891 20 H 0.060 0.940 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.125 0.875 25 H 0.057 0.943 26 H 0.128 0.872 27 H 0.368 0.632 28 H 0.250 0.750 29 H 0.055 0.945 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.447 -1.741 -12.661 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.003 4.003 3 O -0.290 6.290 4 C 0.421 3.579 5 O -0.513 6.513 6 N -0.373 5.373 7 C -0.050 4.050 8 C 0.035 3.965 9 N -0.352 5.352 10 C -0.375 4.375 11 H 0.114 0.886 12 C -0.271 4.271 13 N -0.625 5.625 14 Si 0.809 3.191 15 H -0.216 1.216 16 H -0.230 1.230 17 H -0.184 1.184 18 C -0.011 4.011 19 H 0.128 0.872 20 H 0.079 0.921 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.142 0.858 25 H 0.076 0.924 26 H 0.145 0.855 27 H 0.199 0.801 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.365 -2.088 -12.581 13.835 hybrid contribution -0.021 -0.277 1.145 1.178 sum -5.385 -2.365 -11.436 12.860 Atomic orbital electron populations 1.21833 0.89762 1.04707 1.03570 1.23256 0.96941 0.77778 1.02344 1.86270 1.21168 1.34668 1.86867 1.17616 0.81300 0.82748 0.76196 1.90906 1.60917 1.40150 1.59332 1.48350 1.12575 1.02610 1.73777 1.24338 1.00794 0.77537 1.02306 1.21867 0.93897 0.97406 0.83364 1.42387 1.86548 1.05713 1.00588 1.19820 1.41132 0.87792 0.88721 0.88563 1.25718 1.03387 0.99617 0.98373 1.69874 1.59254 1.24342 1.09041 0.85045 0.77382 0.79024 0.77684 1.21573 1.22965 1.18364 1.23902 0.83229 0.91457 1.02541 0.87223 0.92066 0.90782 0.90805 0.92441 0.85770 0.92419 0.85503 0.80083 0.94146 0.92611 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 10.29 71.98 0.74 -1.99 16 2 C 0.07 1.98 6.19 71.98 0.45 2.42 16 3 O -0.38 -13.54 10.25 -55.48 -0.57 -14.11 16 4 C 0.67 27.15 8.96 129.79 1.16 28.31 16 5 O -0.62 -28.45 16.91 19.80 0.33 -28.12 16 6 N -0.63 -23.11 3.69 -988.42 -3.64 -26.75 16 7 C 0.08 2.35 8.48 83.26 0.71 3.05 16 8 C 0.15 5.05 4.84 45.55 0.22 5.27 16 9 N -0.72 -34.85 5.44 -321.92 -1.75 -36.60 16 10 C -0.24 -12.71 9.97 84.03 0.84 -11.88 16 11 H 0.10 4.54 7.83 -2.91 -0.02 4.52 16 12 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 13 N -0.98 -60.21 13.06 21.65 0.28 -59.92 16 14 Si 0.98 44.71 29.55 68.60 2.03 46.74 16 15 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 16 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 17 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 18 C 0.11 3.52 8.38 83.18 0.70 4.21 16 19 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 20 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 25 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.13 3.59 8.11 -2.38 -0.02 3.57 16 27 H 0.37 20.62 7.96 -92.71 -0.74 19.89 16 28 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.13 2.96 8.14 -2.38 -0.02 2.94 16 Total: -1.00 -72.11 268.30 2.35 -69.76 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.40 Total: 23.56 kcal Atomic # 6 Polarization: 20.18 SS G_CDS: 5.28 Total: 25.45 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -5.11 Total: -123.28 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -0.23 Total: -42.23 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -72.11 2.35 -69.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260273308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.751 kcal (2) G-P(sol) polarization free energy of solvation -72.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds