Wall clock time and date at job start Mon Mar 30 2020 03:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47522 * 2 1 4 4 H 1.09001 * 109.48348 * 304.98400 * 3 2 1 5 5 C 1.53093 * 109.48571 * 184.94214 * 3 2 1 6 6 C 1.53174 * 109.16375 * 182.41154 * 5 3 2 7 7 H 1.09006 * 109.54594 * 297.02146 * 6 5 3 8 8 O 1.42907 * 109.54217 * 176.84989 * 6 5 3 9 9 C 1.42904 * 113.99963 * 149.99582 * 8 6 5 10 10 C 1.50699 * 109.46971 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99667 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99834 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99706 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 119.99809 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47400 * 90.00205 * 14 12 10 16 16 H 1.48502 * 109.47036 * 210.00362 * 14 12 10 17 17 H 1.48503 * 109.47459 * 330.00102 * 14 12 10 18 18 C 1.53172 * 109.03844 * 56.98496 * 6 5 3 19 19 C 1.53096 * 109.16237 * 303.01800 * 18 6 5 20 20 O 1.42905 * 109.47665 * 65.00319 * 3 2 1 21 21 H 1.08995 * 109.46782 * 59.99352 * 1 2 3 22 22 H 1.08996 * 109.47107 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46633 * 299.99798 * 1 2 3 24 24 H 1.09008 * 109.47070 * 240.00078 * 2 1 3 25 25 H 1.08999 * 109.47239 * 120.00807 * 2 1 3 26 26 H 1.09001 * 109.52010 * 302.32061 * 5 3 2 27 27 H 1.09007 * 109.51637 * 62.50584 * 5 3 2 28 28 H 1.08997 * 109.47002 * 300.00542 * 9 8 6 29 29 H 1.08999 * 109.46474 * 60.00339 * 9 8 6 30 30 H 0.97009 * 119.99534 * 180.02562 * 13 12 10 31 31 H 1.08996 * 109.52430 * 183.11632 * 18 6 5 32 32 H 1.08993 * 109.52369 * 62.91915 * 18 6 5 33 33 H 1.09005 * 109.47867 * 297.62453 * 19 18 6 34 34 H 1.09001 * 109.48124 * 177.59174 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6058 1.9816 -0.8419 5 6 3.5660 1.4445 -0.1243 6 6 4.0735 2.8884 -0.0630 7 1 3.6814 3.4491 -0.9115 8 8 5.5020 2.8952 -0.1046 9 6 6.0602 4.0613 -0.7134 10 6 7.5639 3.9626 -0.7026 11 1 8.0451 3.0959 -0.2741 12 6 8.3253 4.9789 -1.2398 13 7 7.7392 6.0345 -1.7611 14 14 10.1891 4.8563 -1.2271 15 1 10.6499 4.1893 -2.4713 16 1 10.7743 6.2190 -1.1501 17 1 10.6251 4.0632 -0.0497 18 6 3.5959 3.5308 1.2429 19 6 2.0689 3.4482 1.3146 20 8 1.6622 2.0814 1.2211 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8934 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.9990 0.8710 0.6953 27 1 3.8544 0.9970 -1.0756 28 1 5.7080 4.1381 -1.7421 29 1 5.7504 4.9455 -0.1564 30 1 8.2749 6.7493 -2.1394 31 1 3.9058 4.5755 1.2696 32 1 4.0295 2.9995 2.0901 33 1 1.6352 4.0138 0.4898 34 1 1.7263 3.8655 2.2614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260290012.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:19 Heat of formation + Delta-G solvation = -119.847880 kcal Electronic energy + Delta-G solvation = -14639.039318 eV Core-core repulsion = 12150.092074 eV Total energy + Delta-G solvation = -2488.947244 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.42743 -36.61825 -33.92766 -32.95063 -31.67613 -29.69650 -27.23115 -24.53687 -23.39723 -22.37202 -21.04612 -20.02161 -16.51262 -16.33537 -16.01290 -15.37293 -14.60681 -14.44953 -14.16666 -13.84370 -13.63219 -13.09512 -12.71460 -12.49791 -11.79928 -11.70490 -11.52143 -11.05107 -11.02872 -10.91525 -10.89458 -10.57810 -10.40809 -10.23730 -9.81965 -9.44198 -9.09245 -8.82817 -8.17230 -6.13111 -4.14964 3.29082 3.34070 3.39588 3.87853 4.30446 4.58583 4.98117 5.03877 5.15280 5.21652 5.23400 5.32861 5.40894 5.46355 5.54206 5.70849 5.82253 5.90349 5.93004 6.00221 6.09401 6.17205 6.24370 6.35310 6.50860 6.59559 7.08884 7.36859 7.40744 7.77793 8.13230 8.55785 8.98558 9.50102 10.98369 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.063431 B = 0.005738 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.319210 B = 4878.370789 C = 5082.889287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.093 3.907 4 H 0.056 0.944 5 C -0.146 4.146 6 C 0.089 3.911 7 H 0.050 0.950 8 O -0.387 6.387 9 C 0.195 3.805 10 C -0.516 4.516 11 H 0.066 0.934 12 C 0.057 3.943 13 N -0.899 5.899 14 Si 0.908 3.092 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.271 1.271 18 C -0.177 4.177 19 C 0.066 3.934 20 O -0.381 6.381 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.004 0.996 29 H 0.005 0.995 30 H 0.264 0.736 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.600 -7.437 3.149 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.035 3.965 4 H 0.074 0.926 5 C -0.183 4.183 6 C 0.030 3.970 7 H 0.068 0.932 8 O -0.307 6.307 9 C 0.121 3.879 10 C -0.554 4.554 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.735 3.265 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.215 4.215 19 C -0.011 4.011 20 O -0.300 6.300 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.022 0.978 29 H 0.023 0.977 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.538 -7.504 3.278 14.976 hybrid contribution 1.062 0.602 -0.399 1.284 sum -11.476 -6.902 2.879 13.698 Atomic orbital electron populations 1.21718 0.95472 1.01238 1.02184 1.21537 0.96376 0.94527 1.02823 1.22122 0.93462 0.93853 0.87018 0.92596 1.22298 0.94945 0.97577 1.03526 1.21823 0.84907 0.94794 0.95467 0.93193 1.87909 1.15866 1.45156 1.81732 1.20247 0.93877 0.82324 0.91493 1.21067 0.90141 1.05202 1.38995 0.91546 1.24948 0.99532 0.94891 0.95086 1.69966 1.35883 1.08374 1.39566 0.86332 0.84158 0.77340 0.78650 1.20435 1.21047 1.19603 1.22717 0.95814 1.02617 1.00341 1.22529 0.94079 0.82768 1.01678 1.87860 1.78566 1.24917 1.38698 0.93035 0.92970 0.91996 0.90613 0.91067 0.90511 0.90620 0.97777 0.97705 0.92641 0.90625 0.90578 0.93453 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.81 37.16 0.36 -1.10 16 2 C -0.12 -1.29 5.64 -26.73 -0.15 -1.44 16 3 C 0.09 1.26 2.64 -26.69 -0.07 1.19 16 4 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.15 -2.33 5.07 -26.59 -0.13 -2.47 16 6 C 0.09 1.71 2.70 -26.55 -0.07 1.64 16 7 H 0.05 0.96 7.79 -51.93 -0.40 0.55 16 8 O -0.39 -9.51 9.98 -35.23 -0.35 -9.87 16 9 C 0.19 5.39 5.51 36.01 0.20 5.59 16 10 C -0.52 -15.33 9.43 -34.44 -0.32 -15.65 16 11 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 14 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.18 -3.00 5.76 -26.59 -0.15 -3.16 16 19 C 0.07 0.92 6.84 37.21 0.25 1.17 16 20 O -0.38 -5.57 9.94 -35.23 -0.35 -5.92 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 24 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 28 H 0.00 0.13 8.09 -51.93 -0.42 -0.29 16 29 H 0.01 0.15 7.99 -51.93 -0.42 -0.27 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.08 1.33 7.99 -51.93 -0.42 0.91 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 280.17 15.07 4.22 4.22 Total: -1.00 -31.08 280.17 -6.78 -37.86 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -5.83 Total: -4.30 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -0.19 Total: -12.67 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.70 Total: -15.79 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.08 -6.78 -37.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290012.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.989 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds