Wall clock time and date at job start Mon Mar 30 2020 03:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47522 * 2 1 4 4 H 1.09001 * 109.48348 * 304.98400 * 3 2 1 5 5 C 1.53093 * 109.48571 * 184.94214 * 3 2 1 6 6 C 1.53174 * 109.16375 * 182.41154 * 5 3 2 7 7 H 1.09006 * 109.54594 * 297.02146 * 6 5 3 8 8 O 1.42907 * 109.54217 * 176.84989 * 6 5 3 9 9 C 1.42904 * 113.99963 * 149.99582 * 8 6 5 10 10 C 1.50699 * 109.46971 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99667 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99834 * 180.02562 * 10 9 8 13 13 N 1.31513 * 119.99706 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 119.99809 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47400 * 90.00205 * 14 12 10 16 16 H 1.48502 * 109.47036 * 210.00362 * 14 12 10 17 17 H 1.48503 * 109.47459 * 330.00102 * 14 12 10 18 18 C 1.53172 * 109.03844 * 56.98496 * 6 5 3 19 19 C 1.53096 * 109.16237 * 303.01800 * 18 6 5 20 20 O 1.42905 * 109.47665 * 65.00319 * 3 2 1 21 21 H 1.08995 * 109.46782 * 59.99352 * 1 2 3 22 22 H 1.08996 * 109.47107 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46633 * 299.99798 * 1 2 3 24 24 H 1.09008 * 109.47070 * 240.00078 * 2 1 3 25 25 H 1.08999 * 109.47239 * 120.00807 * 2 1 3 26 26 H 1.09001 * 109.52010 * 302.32061 * 5 3 2 27 27 H 1.09007 * 109.51637 * 62.50584 * 5 3 2 28 28 H 1.08997 * 109.47002 * 300.00542 * 9 8 6 29 29 H 1.08999 * 109.46474 * 60.00339 * 9 8 6 30 30 H 0.97009 * 119.99534 * 180.02562 * 13 12 10 31 31 H 1.08996 * 109.52430 * 183.11632 * 18 6 5 32 32 H 1.08993 * 109.52369 * 62.91915 * 18 6 5 33 33 H 1.09005 * 109.47867 * 297.62453 * 19 18 6 34 34 H 1.09001 * 109.48124 * 177.59174 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6058 1.9816 -0.8419 5 6 3.5660 1.4445 -0.1243 6 6 4.0735 2.8884 -0.0630 7 1 3.6814 3.4491 -0.9115 8 8 5.5020 2.8952 -0.1046 9 6 6.0602 4.0613 -0.7134 10 6 7.5639 3.9626 -0.7026 11 1 8.0451 3.0959 -0.2741 12 6 8.3253 4.9789 -1.2398 13 7 7.7392 6.0345 -1.7611 14 14 10.1891 4.8563 -1.2271 15 1 10.6499 4.1893 -2.4713 16 1 10.7743 6.2190 -1.1501 17 1 10.6251 4.0632 -0.0497 18 6 3.5959 3.5308 1.2429 19 6 2.0689 3.4482 1.3146 20 8 1.6622 2.0814 1.2211 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8934 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.9990 0.8710 0.6953 27 1 3.8544 0.9970 -1.0756 28 1 5.7080 4.1381 -1.7421 29 1 5.7504 4.9455 -0.1564 30 1 8.2749 6.7493 -2.1394 31 1 3.9058 4.5755 1.2696 32 1 4.0295 2.9995 2.0901 33 1 1.6352 4.0138 0.4898 34 1 1.7263 3.8655 2.2614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260290012.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:19 Heat of formation + Delta-G solvation = -139.757916 kcal Electronic energy + Delta-G solvation = -14639.902682 eV Core-core repulsion = 12150.092074 eV Total energy + Delta-G solvation = -2489.810608 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.71589 -38.36032 -35.07666 -34.91109 -33.28107 -30.81390 -29.37032 -25.82152 -24.67386 -24.40922 -22.12626 -21.41018 -18.68441 -17.64488 -17.42649 -17.00157 -16.34996 -16.00505 -15.69314 -15.19470 -14.65323 -14.50565 -14.30151 -13.88199 -13.64599 -12.96658 -12.86427 -12.74780 -12.66928 -12.28661 -12.22414 -12.00062 -11.88174 -11.70252 -11.34932 -11.20577 -10.86526 -10.58738 -10.20475 -8.35519 -6.48591 1.38337 1.41164 1.53323 2.31964 2.77778 2.98176 3.01475 3.74061 3.84403 3.89974 4.04908 4.15126 4.25987 4.31880 4.42246 4.55827 4.66199 4.73211 4.77179 4.83380 4.89866 5.05461 5.07920 5.14213 5.15118 5.21813 5.29928 5.48317 5.52238 5.92349 6.24134 6.49331 6.77753 7.23692 8.76720 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.063431 B = 0.005738 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.319210 B = 4878.370789 C = 5082.889287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.095 3.905 4 H 0.064 0.936 5 C -0.139 4.139 6 C 0.074 3.926 7 H 0.046 0.954 8 O -0.404 6.404 9 C 0.211 3.789 10 C -0.553 4.553 11 H 0.060 0.940 12 C 0.008 3.992 13 N -0.929 5.929 14 Si 0.984 3.016 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.265 1.265 18 C -0.173 4.173 19 C 0.072 3.928 20 O -0.386 6.386 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.079 0.921 28 H -0.015 1.015 29 H -0.013 1.013 30 H 0.272 0.728 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.820 -8.115 3.219 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C 0.037 3.963 4 H 0.082 0.918 5 C -0.177 4.177 6 C 0.016 3.984 7 H 0.064 0.936 8 O -0.324 6.324 9 C 0.136 3.864 10 C -0.590 4.590 11 H 0.079 0.921 12 C -0.190 4.190 13 N -0.568 5.568 14 Si 0.807 3.193 15 H -0.192 1.192 16 H -0.197 1.197 17 H -0.189 1.189 18 C -0.211 4.211 19 C -0.005 4.005 20 O -0.305 6.305 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.108 0.892 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.002 0.998 29 H 0.005 0.995 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.788 -8.193 3.353 15.553 hybrid contribution 1.067 0.814 -0.425 1.408 sum -11.720 -7.379 2.927 14.156 Atomic orbital electron populations 1.21688 0.94228 1.02312 1.02018 1.21565 0.97401 0.92659 1.03432 1.22233 0.91351 0.95631 0.87048 0.91769 1.22294 0.96957 0.94963 1.03472 1.22241 0.82138 0.97433 0.96621 0.93562 1.87858 1.19336 1.43775 1.81459 1.19848 0.93548 0.82797 0.90176 1.21397 0.91359 1.05811 1.40455 0.92127 1.25963 1.05223 0.94018 0.93840 1.70068 1.38229 1.09017 1.39530 0.85171 0.77021 0.77984 0.79170 1.19159 1.19748 1.18949 1.22666 0.98465 1.01374 0.98582 1.22581 0.91345 0.82945 1.03606 1.87873 1.78252 1.25142 1.39228 0.92488 0.91329 0.92859 0.89227 0.91307 0.91161 0.90284 0.99762 0.99526 0.91947 0.91873 0.91356 0.92295 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.81 71.98 0.71 -1.79 16 2 C -0.11 -2.28 5.64 30.59 0.17 -2.11 16 3 C 0.10 2.43 2.64 30.62 0.08 2.51 16 4 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 5 C -0.14 -4.40 5.07 30.68 0.16 -4.25 16 6 C 0.07 2.88 2.70 30.71 0.08 2.97 16 7 H 0.05 1.82 7.79 -2.38 -0.02 1.81 16 8 O -0.40 -20.53 9.98 -148.98 -1.49 -22.01 16 9 C 0.21 12.14 5.51 71.24 0.39 12.54 16 10 C -0.55 -33.54 9.43 25.60 0.24 -33.30 16 11 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 12 C 0.01 0.48 5.46 84.66 0.46 0.94 16 13 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 14 Si 0.98 44.62 29.54 68.60 2.03 46.65 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 C -0.17 -5.90 5.76 30.68 0.18 -5.73 16 19 C 0.07 1.89 6.84 72.01 0.49 2.38 16 20 O -0.39 -10.57 9.94 -148.98 -1.48 -12.06 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 24 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 28 H -0.02 -0.92 8.09 -2.39 -0.02 -0.94 16 29 H -0.01 -0.78 7.99 -2.39 -0.02 -0.80 16 30 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 31 H 0.06 2.28 7.99 -2.39 -0.02 2.26 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -66.69 280.17 3.35 -63.35 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.04 Total: 5.78 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 2.96 Total: -25.84 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.86 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -2.97 Total: -34.07 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.69 3.35 -63.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290012.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.411 kcal (2) G-P(sol) polarization free energy of solvation -66.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds