Wall clock time and date at job start Mon Mar 30 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46733 * 2 1 4 4 H 1.08998 * 109.48295 * 54.98172 * 3 2 1 5 5 C 1.53098 * 109.47586 * 175.00176 * 3 2 1 6 6 C 1.53177 * 109.21356 * 177.55854 * 5 3 2 7 7 H 1.09005 * 109.54330 * 62.92184 * 6 5 3 8 8 O 1.42903 * 109.54338 * 183.18047 * 6 5 3 9 9 C 1.42900 * 114.00375 * 210.00146 * 8 6 5 10 10 C 1.50695 * 109.47262 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99907 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00049 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00084 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47402 * 89.99644 * 14 12 10 16 16 H 1.48500 * 109.47595 * 209.99958 * 14 12 10 17 17 H 1.48504 * 109.47385 * 330.00073 * 14 12 10 18 18 C 1.53180 * 109.03525 * 303.11207 * 6 5 3 19 19 C 1.53097 * 109.21119 * 56.88485 * 18 6 5 20 20 O 1.42898 * 109.41405 * 302.42599 * 19 18 6 21 21 H 1.09003 * 109.47168 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46918 * 299.99981 * 1 2 3 23 23 H 1.08999 * 109.47395 * 59.99949 * 1 2 3 24 24 H 1.09003 * 109.46690 * 240.00456 * 2 1 3 25 25 H 1.08998 * 109.46947 * 120.00342 * 2 1 3 26 26 H 1.09002 * 109.52244 * 297.49793 * 5 3 2 27 27 H 1.09004 * 109.52508 * 57.62322 * 5 3 2 28 28 H 1.09009 * 109.46994 * 300.00447 * 9 8 6 29 29 H 1.09002 * 109.46910 * 59.99761 * 9 8 6 30 30 H 0.97003 * 119.99907 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.46996 * 296.98297 * 18 6 5 32 32 H 1.09003 * 109.52778 * 176.82145 * 18 6 5 33 33 H 1.09007 * 109.47760 * 182.43925 * 19 18 6 34 34 H 1.08997 * 109.48022 * 62.41203 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 0.8415 5 6 3.5657 1.4446 0.1258 6 6 4.0747 2.8880 0.0638 7 1 3.6814 3.4500 0.9110 8 8 5.5031 2.8934 0.1061 9 6 6.0622 4.0594 0.7144 10 6 7.5658 3.9593 0.7044 11 1 8.0463 3.0919 0.2767 12 6 8.3279 4.9746 1.2423 13 7 7.7426 6.0307 1.7636 14 14 10.1916 4.8503 1.2306 15 1 10.7201 5.4521 -0.0199 16 1 10.7437 5.5775 2.4017 17 1 10.5929 3.4222 1.3006 18 6 3.5969 3.5306 -1.2420 19 6 2.0699 3.4479 -1.3150 20 8 1.6632 2.0812 -1.2216 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.8534 0.9974 1.0773 27 1 3.9995 0.8700 -0.6927 28 1 5.7535 4.9437 0.1568 29 1 5.7096 4.1371 1.7429 30 1 8.2787 6.7449 2.1424 31 1 4.0313 2.9990 -2.0887 32 1 3.9068 4.5753 -1.2687 33 1 1.7282 3.8650 -2.2623 34 1 1.6355 4.0136 -0.4908 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260290015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:21 Heat of formation + Delta-G solvation = -119.856335 kcal Electronic energy + Delta-G solvation = -14638.505945 eV Core-core repulsion = 12149.558335 eV Total energy + Delta-G solvation = -2488.947610 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.42676 -36.61874 -33.92824 -32.95039 -31.67679 -29.69595 -27.23170 -24.53759 -23.39885 -22.37219 -21.04725 -20.01934 -16.51300 -16.33662 -16.01358 -15.37396 -14.60659 -14.44877 -14.16740 -13.84497 -13.63216 -13.09553 -12.71479 -12.49798 -11.79908 -11.70451 -11.52117 -11.05024 -11.01910 -10.94289 -10.88261 -10.56763 -10.40961 -10.24317 -9.81847 -9.44294 -9.08788 -8.83235 -8.17183 -6.13109 -4.14983 3.29100 3.34085 3.39514 3.87821 4.30410 4.58541 4.98041 5.03823 5.15265 5.21687 5.23369 5.32880 5.40840 5.46332 5.54257 5.70791 5.82261 5.90344 5.93047 6.00208 6.09365 6.17115 6.24384 6.35344 6.50898 6.59456 7.08859 7.36884 7.40692 7.77808 8.13224 8.55791 8.98571 9.50083 10.98368 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.063405 B = 0.005738 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.496248 B = 4878.822889 C = 5083.592824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.093 3.907 4 H 0.056 0.944 5 C -0.146 4.146 6 C 0.089 3.911 7 H 0.050 0.950 8 O -0.387 6.387 9 C 0.195 3.805 10 C -0.516 4.516 11 H 0.066 0.934 12 C 0.057 3.943 13 N -0.899 5.899 14 Si 0.908 3.092 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.271 1.271 18 C -0.177 4.177 19 C 0.066 3.934 20 O -0.381 6.381 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.005 0.995 29 H 0.005 0.995 30 H 0.264 0.736 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.606 -7.432 -3.148 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.036 3.964 4 H 0.074 0.926 5 C -0.184 4.184 6 C 0.030 3.970 7 H 0.068 0.932 8 O -0.306 6.306 9 C 0.121 3.879 10 C -0.554 4.554 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.735 3.265 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.215 4.215 19 C -0.010 4.010 20 O -0.300 6.300 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.545 -7.504 -3.268 14.979 hybrid contribution 1.063 0.612 0.379 1.284 sum -11.482 -6.892 -2.889 13.699 Atomic orbital electron populations 1.21719 0.95473 1.01240 1.02183 1.21536 0.96375 0.94524 1.02824 1.22120 0.93464 0.93858 0.87005 0.92596 1.22297 0.94945 0.97579 1.03531 1.21816 0.84902 0.94789 0.95469 0.93209 1.87907 1.15848 1.45134 1.81755 1.20248 0.93864 0.82323 0.91505 1.21065 0.90140 1.05212 1.38987 0.91545 1.24950 0.99533 0.94917 0.95056 1.69964 1.35882 1.08383 1.39566 0.86332 0.84170 0.78355 0.77618 1.20434 1.21050 1.19605 1.22723 0.95820 1.02612 1.00358 1.22526 0.94067 0.82768 1.01680 1.87857 1.78613 1.24924 1.38643 0.92970 0.93036 0.91997 0.91065 0.90609 0.90626 0.90518 0.97719 0.97765 0.92638 0.90587 0.90628 0.88997 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.81 37.16 0.36 -1.10 16 2 C -0.12 -1.29 5.64 -26.73 -0.15 -1.44 16 3 C 0.09 1.27 2.64 -26.68 -0.07 1.20 16 4 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 5 C -0.15 -2.34 5.07 -26.59 -0.13 -2.47 16 6 C 0.09 1.72 2.70 -26.55 -0.07 1.64 16 7 H 0.05 0.96 7.79 -51.93 -0.40 0.55 16 8 O -0.39 -9.51 9.98 -35.23 -0.35 -9.86 16 9 C 0.19 5.39 5.51 36.00 0.20 5.59 16 10 C -0.52 -15.32 9.43 -34.44 -0.32 -15.65 16 11 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 14 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 18 C -0.18 -3.01 5.76 -26.59 -0.15 -3.16 16 19 C 0.07 0.92 6.84 37.21 0.25 1.18 16 20 O -0.38 -5.57 9.94 -35.23 -0.35 -5.92 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.66 7.82 -51.93 -0.41 0.25 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.00 0.14 8.00 -51.92 -0.42 -0.27 16 29 H 0.00 0.13 8.09 -51.93 -0.42 -0.29 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.33 8.00 -51.93 -0.42 0.91 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 280.19 15.07 4.22 4.22 Total: -1.00 -31.07 280.19 -6.78 -37.86 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -5.83 Total: -4.30 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -0.19 Total: -12.67 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.70 Total: -15.78 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.07 -6.78 -37.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.998 kcal (2) G-P(sol) polarization free energy of solvation -31.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds