Wall clock time and date at job start Mon Mar 30 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46733 * 2 1 4 4 H 1.08998 * 109.48295 * 54.98172 * 3 2 1 5 5 C 1.53098 * 109.47586 * 175.00176 * 3 2 1 6 6 C 1.53177 * 109.21356 * 177.55854 * 5 3 2 7 7 H 1.09005 * 109.54330 * 62.92184 * 6 5 3 8 8 O 1.42903 * 109.54338 * 183.18047 * 6 5 3 9 9 C 1.42900 * 114.00375 * 210.00146 * 8 6 5 10 10 C 1.50695 * 109.47262 * 180.02562 * 9 8 6 11 11 H 1.07994 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99907 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00049 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00084 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47402 * 89.99644 * 14 12 10 16 16 H 1.48500 * 109.47595 * 209.99958 * 14 12 10 17 17 H 1.48504 * 109.47385 * 330.00073 * 14 12 10 18 18 C 1.53180 * 109.03525 * 303.11207 * 6 5 3 19 19 C 1.53097 * 109.21119 * 56.88485 * 18 6 5 20 20 O 1.42898 * 109.41405 * 302.42599 * 19 18 6 21 21 H 1.09003 * 109.47168 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.46918 * 299.99981 * 1 2 3 23 23 H 1.08999 * 109.47395 * 59.99949 * 1 2 3 24 24 H 1.09003 * 109.46690 * 240.00456 * 2 1 3 25 25 H 1.08998 * 109.46947 * 120.00342 * 2 1 3 26 26 H 1.09002 * 109.52244 * 297.49793 * 5 3 2 27 27 H 1.09004 * 109.52508 * 57.62322 * 5 3 2 28 28 H 1.09009 * 109.46994 * 300.00447 * 9 8 6 29 29 H 1.09002 * 109.46910 * 59.99761 * 9 8 6 30 30 H 0.97003 * 119.99907 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.46996 * 296.98297 * 18 6 5 32 32 H 1.09003 * 109.52778 * 176.82145 * 18 6 5 33 33 H 1.09007 * 109.47760 * 182.43925 * 19 18 6 34 34 H 1.08997 * 109.48022 * 62.41203 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 0.8415 5 6 3.5657 1.4446 0.1258 6 6 4.0747 2.8880 0.0638 7 1 3.6814 3.4500 0.9110 8 8 5.5031 2.8934 0.1061 9 6 6.0622 4.0594 0.7144 10 6 7.5658 3.9593 0.7044 11 1 8.0463 3.0919 0.2767 12 6 8.3279 4.9746 1.2423 13 7 7.7426 6.0307 1.7636 14 14 10.1916 4.8503 1.2306 15 1 10.7201 5.4521 -0.0199 16 1 10.7437 5.5775 2.4017 17 1 10.5929 3.4222 1.3006 18 6 3.5969 3.5306 -1.2420 19 6 2.0699 3.4479 -1.3150 20 8 1.6632 2.0812 -1.2216 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.8534 0.9974 1.0773 27 1 3.9995 0.8700 -0.6927 28 1 5.7535 4.9437 0.1568 29 1 5.7096 4.1371 1.7429 30 1 8.2787 6.7449 2.1424 31 1 4.0313 2.9990 -2.0887 32 1 3.9068 4.5753 -1.2687 33 1 1.7282 3.8650 -2.2623 34 1 1.6355 4.0136 -0.4908 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260290015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:21 Heat of formation + Delta-G solvation = -139.765278 kcal Electronic energy + Delta-G solvation = -14639.369262 eV Core-core repulsion = 12149.558335 eV Total energy + Delta-G solvation = -2489.810927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.71499 -38.36115 -35.07624 -34.91162 -33.28187 -30.81336 -29.37090 -25.82235 -24.67566 -24.40903 -22.12718 -21.40806 -18.68498 -17.64666 -17.42746 -17.00154 -16.34900 -16.00580 -15.69348 -15.19598 -14.65385 -14.50521 -14.30125 -13.88264 -13.64576 -12.95569 -12.88116 -12.74783 -12.66328 -12.28681 -12.22158 -11.99921 -11.88550 -11.70413 -11.34740 -11.20403 -10.86692 -10.58784 -10.20473 -8.35517 -6.48614 1.38345 1.41142 1.53293 2.31936 2.77750 2.98129 3.01430 3.73903 3.84378 3.89993 4.05031 4.15099 4.25997 4.31849 4.42257 4.55820 4.66146 4.73199 4.77138 4.83351 4.89831 5.05446 5.07904 5.14218 5.15092 5.21786 5.29898 5.48311 5.52252 5.92333 6.24181 6.49333 6.77761 7.23670 8.76720 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.063405 B = 0.005738 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.496248 B = 4878.822889 C = 5083.592824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.095 3.905 4 H 0.064 0.936 5 C -0.139 4.139 6 C 0.074 3.926 7 H 0.046 0.954 8 O -0.404 6.404 9 C 0.211 3.789 10 C -0.553 4.553 11 H 0.061 0.939 12 C 0.008 3.992 13 N -0.929 5.929 14 Si 0.984 3.016 15 H -0.267 1.267 16 H -0.272 1.272 17 H -0.265 1.265 18 C -0.173 4.173 19 C 0.072 3.928 20 O -0.386 6.386 21 H 0.068 0.932 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.070 0.930 28 H -0.013 1.013 29 H -0.015 1.015 30 H 0.272 0.728 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.828 -8.097 -3.247 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C 0.037 3.963 4 H 0.082 0.918 5 C -0.177 4.177 6 C 0.016 3.984 7 H 0.064 0.936 8 O -0.324 6.324 9 C 0.136 3.864 10 C -0.590 4.590 11 H 0.079 0.921 12 C -0.190 4.190 13 N -0.568 5.568 14 Si 0.807 3.193 15 H -0.192 1.192 16 H -0.197 1.197 17 H -0.189 1.189 18 C -0.211 4.211 19 C -0.005 4.005 20 O -0.305 6.305 21 H 0.087 0.913 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.005 0.995 29 H 0.002 0.998 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.795 -8.178 -3.374 15.556 hybrid contribution 1.069 0.820 0.414 1.409 sum -11.727 -7.358 -2.960 14.157 Atomic orbital electron populations 1.21690 0.94226 1.02314 1.02019 1.21565 0.97403 0.92658 1.03431 1.22231 0.91348 0.95636 0.87037 0.91766 1.22294 0.96959 0.94968 1.03472 1.22234 0.82136 0.97425 0.96631 0.93574 1.87856 1.19314 1.43755 1.81483 1.19848 0.93538 0.82797 0.90186 1.21395 0.91359 1.05815 1.40449 0.92123 1.25965 1.05222 0.94045 0.93813 1.70067 1.38225 1.09025 1.39533 0.85171 0.77035 0.78793 0.78347 1.19234 1.19723 1.18899 1.22672 0.98469 1.01369 0.98593 1.22578 0.91334 0.82945 1.03610 1.87870 1.78297 1.25150 1.39171 0.91330 0.92487 0.92856 0.91306 0.89228 0.90298 0.91169 0.99534 0.99755 0.91945 0.91366 0.91872 0.86471 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.81 71.98 0.71 -1.79 16 2 C -0.11 -2.28 5.64 30.59 0.17 -2.11 16 3 C 0.10 2.43 2.64 30.63 0.08 2.51 16 4 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 5 C -0.14 -4.41 5.07 30.69 0.16 -4.25 16 6 C 0.07 2.89 2.70 30.71 0.08 2.97 16 7 H 0.05 1.82 7.79 -2.38 -0.02 1.80 16 8 O -0.40 -20.52 9.98 -148.98 -1.49 -22.01 16 9 C 0.21 12.14 5.51 71.23 0.39 12.54 16 10 C -0.55 -33.54 9.43 25.60 0.24 -33.29 16 11 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 12 C 0.01 0.48 5.46 84.65 0.46 0.94 16 13 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 14 Si 0.98 44.62 29.54 68.60 2.03 46.65 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 C -0.17 -5.91 5.76 30.69 0.18 -5.73 16 19 C 0.07 1.89 6.84 72.01 0.49 2.38 16 20 O -0.39 -10.57 9.94 -148.98 -1.48 -12.05 16 21 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 28 H -0.01 -0.78 8.00 -2.38 -0.02 -0.80 16 29 H -0.02 -0.91 8.09 -2.39 -0.02 -0.93 16 30 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.06 2.28 8.00 -2.39 -0.02 2.26 16 33 H 0.12 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -66.69 280.19 3.35 -63.35 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.04 Total: 5.77 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 2.96 Total: -25.84 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.87 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -2.97 Total: -34.06 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.69 3.35 -63.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.419 kcal (2) G-P(sol) polarization free energy of solvation -66.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds