Wall clock time and date at job start Mon Mar 30 2020 03:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08996 * 109.48249 * 55.02479 * 3 2 1 5 5 C 1.53094 * 109.47894 * 175.05988 * 3 2 1 6 6 C 1.53179 * 109.16416 * 177.58981 * 5 3 2 7 7 H 1.08993 * 109.54254 * 183.14898 * 6 5 3 8 8 O 1.42904 * 109.61511 * 62.92732 * 6 5 3 9 9 C 1.42897 * 113.99805 * 150.40014 * 8 6 5 10 10 C 1.50703 * 109.47032 * 180.02562 * 9 8 6 11 11 H 1.07997 * 119.99798 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99827 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99875 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99733 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47180 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46945 * 119.99764 * 14 12 10 17 17 H 1.48497 * 109.47149 * 239.99663 * 14 12 10 18 18 C 1.53175 * 109.03602 * 303.01818 * 6 5 3 19 19 C 1.53093 * 109.16480 * 56.97807 * 18 6 5 20 20 O 1.42902 * 109.47726 * 294.99547 * 3 2 1 21 21 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 22 22 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 24 24 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 25 25 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 26 26 H 1.09003 * 109.52040 * 297.49250 * 5 3 2 27 27 H 1.09001 * 109.52414 * 57.67844 * 5 3 2 28 28 H 1.08994 * 109.47370 * 299.99995 * 9 8 6 29 29 H 1.09001 * 109.47294 * 60.00033 * 9 8 6 30 30 H 0.97005 * 119.99604 * 180.02562 * 13 12 10 31 31 H 1.09006 * 109.52109 * 297.07774 * 18 6 5 32 32 H 1.08995 * 109.57575 * 176.91516 * 18 6 5 33 33 H 1.08995 * 109.48059 * 182.40854 * 19 18 6 34 34 H 1.08996 * 109.48869 * 62.38270 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 0.8420 5 6 3.5658 1.4445 0.1243 6 6 4.0735 2.8885 0.0630 7 1 5.1629 2.8936 0.0947 8 8 3.5594 3.6253 1.1743 9 6 4.4111 4.6857 1.6125 10 6 3.7742 5.3906 2.7824 11 1 2.8149 5.0619 3.1538 12 6 4.4159 6.4558 3.3779 13 7 5.5839 6.8563 2.9253 14 14 3.6262 7.3300 4.8276 15 1 2.3231 6.6905 5.1412 16 1 4.5204 7.2355 6.0095 17 1 3.4076 8.7583 4.4851 18 6 3.5958 3.5309 -1.2429 19 6 2.0687 3.4483 -1.3145 20 8 1.6621 2.0815 -1.2211 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3635 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8544 0.9971 1.0755 27 1 3.9989 0.8710 -0.6953 28 1 5.3744 4.2762 1.9162 29 1 4.5582 5.3941 0.7973 30 1 6.0355 7.6055 3.3446 31 1 4.0294 2.9996 -2.0902 32 1 3.9057 4.5755 -1.2707 33 1 1.7261 3.8656 -2.2613 34 1 1.6349 4.0138 -0.4898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260290020.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:23 Heat of formation + Delta-G solvation = -138.334386 kcal Electronic energy + Delta-G solvation = -14920.014346 eV Core-core repulsion = 12430.265467 eV Total energy + Delta-G solvation = -2489.748879 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.73987 -38.12484 -35.05809 -34.85180 -33.21589 -30.76875 -29.28815 -25.96238 -24.82864 -24.40642 -22.23042 -20.95054 -18.68682 -17.44468 -17.32284 -17.01929 -16.46512 -16.15690 -15.61731 -15.14780 -14.58506 -14.26904 -14.10732 -13.79966 -13.77945 -12.97541 -12.80127 -12.73942 -12.64353 -12.51834 -12.14853 -12.07610 -11.82630 -11.75597 -11.32711 -11.10559 -10.88158 -10.34603 -10.15831 -8.35185 -6.47566 1.37914 1.38995 1.53682 2.31990 2.85752 2.98708 3.13322 3.71036 3.89752 3.94887 4.04396 4.26186 4.29343 4.48426 4.50399 4.62773 4.72366 4.72710 4.87301 4.89614 4.95338 5.02390 5.11046 5.12872 5.15227 5.21344 5.33081 5.47999 5.52634 5.93718 6.30815 6.51125 6.79711 7.24702 8.77244 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040169 B = 0.007082 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.879070 B = 3952.906995 C = 4240.257478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.091 3.909 4 H 0.038 0.962 5 C -0.136 4.136 6 C 0.068 3.932 7 H 0.050 0.950 8 O -0.398 6.398 9 C 0.212 3.788 10 C -0.548 4.548 11 H 0.060 0.940 12 C 0.007 3.993 13 N -0.930 5.930 14 Si 0.982 3.018 15 H -0.265 1.265 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.170 4.170 19 C 0.071 3.929 20 O -0.385 6.385 21 H 0.051 0.949 22 H 0.072 0.928 23 H 0.044 0.956 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.101 0.899 28 H -0.017 1.017 29 H -0.014 1.014 30 H 0.271 0.729 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.087 -10.858 -7.032 14.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C 0.034 3.966 4 H 0.057 0.943 5 C -0.174 4.174 6 C 0.009 3.991 7 H 0.068 0.932 8 O -0.318 6.318 9 C 0.137 3.863 10 C -0.585 4.585 11 H 0.078 0.922 12 C -0.191 4.191 13 N -0.569 5.569 14 Si 0.804 3.196 15 H -0.189 1.189 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.208 4.208 19 C -0.006 4.006 20 O -0.304 6.304 21 H 0.070 0.930 22 H 0.091 0.909 23 H 0.064 0.936 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.119 0.881 28 H 0.001 0.999 29 H 0.004 0.996 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.228 -10.875 -7.066 14.387 hybrid contribution 0.588 1.105 0.765 1.467 sum -5.640 -9.770 -6.301 12.922 Atomic orbital electron populations 1.21696 0.95016 1.02198 1.01540 1.21563 0.96980 0.92657 1.03531 1.22123 0.93253 0.94860 0.86400 0.94349 1.22275 0.97163 0.94125 1.03816 1.22275 0.97172 0.92725 0.86883 0.93221 1.87849 1.47813 1.47376 1.48783 1.19815 0.88925 0.84248 0.93290 1.21402 1.06267 1.15453 1.15397 0.92213 1.25943 0.95347 0.97169 1.00660 1.70072 1.15997 1.27873 1.42956 0.85160 0.78599 0.78053 0.77755 1.18922 1.19566 1.19589 1.22590 0.98262 1.01673 0.98270 1.22416 0.93242 0.82876 1.02032 1.87806 1.78894 1.24799 1.38914 0.92973 0.90920 0.93640 0.90209 0.89493 0.90455 0.88106 0.99918 0.99622 0.92015 0.88548 0.92136 0.86926 0.94949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.81 71.98 0.71 -2.47 16 2 C -0.11 -2.51 5.64 30.59 0.17 -2.34 16 3 C 0.09 2.78 2.50 30.63 0.08 2.85 16 4 H 0.04 1.40 7.82 -2.39 -0.02 1.38 16 5 C -0.14 -4.15 5.15 30.69 0.16 -3.99 16 6 C 0.07 2.57 2.94 30.71 0.09 2.66 16 7 H 0.05 1.91 7.79 -2.39 -0.02 1.89 16 8 O -0.40 -19.47 8.95 -148.98 -1.33 -20.81 16 9 C 0.21 11.99 5.50 71.24 0.39 12.38 16 10 C -0.55 -32.84 9.43 25.60 0.24 -32.60 16 11 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 12 C 0.01 0.43 5.46 84.66 0.46 0.89 16 13 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 14 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 C -0.17 -5.64 5.83 30.68 0.18 -5.47 16 19 C 0.07 2.28 6.70 72.01 0.48 2.76 16 20 O -0.38 -12.12 9.94 -148.98 -1.48 -13.60 16 21 H 0.05 1.21 7.82 -2.39 -0.02 1.19 16 22 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 28 H -0.02 -1.00 8.09 -2.39 -0.02 -1.02 16 29 H -0.01 -0.82 7.83 -2.39 -0.02 -0.84 16 30 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 31 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 32 H 0.06 2.18 7.83 -2.39 -0.02 2.16 16 33 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.03 1.22 7.82 -2.39 -0.02 1.20 16 Total: -1.00 -65.73 278.25 3.50 -62.23 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.04 Total: 6.65 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 2.96 Total: -25.31 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.28 Total: -55.73 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -2.81 Total: -34.40 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -65.73 3.50 -62.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290020.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.104 kcal (2) G-P(sol) polarization free energy of solvation -65.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds