Wall clock time and date at job start Mon Mar 30 2020 03:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46992 * 2 1 4 4 H 1.08997 * 109.47544 * 304.96960 * 3 2 1 5 5 C 1.53097 * 109.48843 * 184.94545 * 3 2 1 6 6 C 1.53180 * 109.21119 * 182.43325 * 5 3 2 7 7 H 1.09005 * 109.59319 * 176.78366 * 6 5 3 8 8 O 1.42907 * 109.49532 * 297.04707 * 6 5 3 9 9 C 1.42899 * 114.00073 * 209.52369 * 8 6 5 10 10 C 1.50700 * 109.47035 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99903 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00398 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00049 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46869 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47450 * 119.99931 * 14 12 10 17 17 H 1.48505 * 109.47085 * 240.00164 * 14 12 10 18 18 C 1.53177 * 109.03525 * 56.88485 * 6 5 3 19 19 C 1.53098 * 109.21356 * 303.11207 * 18 6 5 20 20 O 1.42898 * 109.48527 * 64.99632 * 3 2 1 21 21 H 1.08996 * 109.47472 * 300.00796 * 1 2 3 22 22 H 1.09007 * 109.46738 * 60.00802 * 1 2 3 23 23 H 1.08998 * 109.46915 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47472 * 239.99204 * 2 1 3 25 25 H 1.09007 * 109.46738 * 119.99198 * 2 1 3 26 26 H 1.09002 * 109.52138 * 302.30346 * 5 3 2 27 27 H 1.09003 * 109.52113 * 62.49256 * 5 3 2 28 28 H 1.08999 * 109.46933 * 300.00194 * 9 8 6 29 29 H 1.08997 * 109.46998 * 60.00311 * 9 8 6 30 30 H 0.96997 * 120.00216 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.52487 * 183.17418 * 18 6 5 32 32 H 1.09004 * 109.52023 * 63.05037 * 18 6 5 33 33 H 1.08999 * 109.47354 * 177.55660 * 19 18 6 34 34 H 1.08998 * 109.47939 * 297.58076 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6058 1.9815 -0.8421 5 6 3.5659 1.4449 -0.1244 6 6 4.0745 2.8884 -0.0626 7 1 5.1641 2.8937 -0.0933 8 8 3.5598 3.6234 -1.1749 9 6 4.4100 4.6848 -1.6138 10 6 3.7720 5.3883 -2.7839 11 1 2.8133 5.0577 -3.1554 12 6 4.4122 6.4540 -3.3800 13 7 5.5795 6.8569 -2.9273 14 14 3.6217 7.3256 -4.8308 15 1 2.3199 6.6838 -5.1444 16 1 3.4006 8.7538 -4.4897 17 1 4.5166 7.2317 -6.0122 18 6 3.5954 3.5315 1.2424 19 6 2.0683 3.4486 1.3140 20 8 1.6620 2.0818 1.2209 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9990 0.8716 0.6953 27 1 3.8545 0.9973 -1.0755 28 1 4.5557 5.3941 -0.7992 29 1 5.3741 4.2763 -1.9167 30 1 6.0300 7.6064 -3.3470 31 1 3.9051 4.5762 1.2689 32 1 4.0291 3.0014 2.0904 33 1 1.7257 3.8660 2.2609 34 1 1.6345 4.0140 0.4893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260290023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:25 Heat of formation + Delta-G solvation = -119.146799 kcal Electronic energy + Delta-G solvation = -14919.610857 eV Core-core repulsion = 12430.694015 eV Total energy + Delta-G solvation = -2488.916843 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.33679 -36.41317 -33.73645 -32.93993 -31.59156 -29.55842 -27.14576 -24.65223 -23.37661 -22.41112 -21.09294 -19.46547 -16.52916 -16.07537 -15.84025 -15.40692 -14.59503 -14.51815 -14.12928 -13.59319 -13.52102 -12.89992 -12.49081 -12.29517 -12.01385 -11.61403 -11.40587 -11.01119 -10.94456 -10.90298 -10.78635 -10.72417 -10.37062 -10.12300 -9.83125 -9.16881 -8.96377 -8.80741 -8.18350 -6.14113 -4.15989 3.26823 3.33528 3.39764 4.10482 4.32064 4.83212 4.92310 5.20471 5.22355 5.28457 5.35960 5.43840 5.48996 5.67495 5.72589 5.86802 5.97283 6.05143 6.06304 6.15288 6.24886 6.27441 6.33639 6.43047 6.48534 6.61357 7.08342 7.39943 7.61442 7.76667 8.12266 8.54366 8.97775 9.49250 10.97365 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040137 B = 0.007085 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.440155 B = 3950.932214 C = 4238.859674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.094 3.906 4 H 0.069 0.931 5 C -0.143 4.143 6 C 0.085 3.915 7 H 0.054 0.946 8 O -0.387 6.387 9 C 0.195 3.805 10 C -0.514 4.514 11 H 0.066 0.934 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.906 3.094 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.175 4.175 19 C 0.070 3.930 20 O -0.386 6.386 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.005 0.995 29 H 0.004 0.996 30 H 0.264 0.736 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.406 -10.029 6.921 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.037 3.963 4 H 0.087 0.913 5 C -0.180 4.180 6 C 0.026 3.974 7 H 0.072 0.928 8 O -0.307 6.307 9 C 0.121 3.879 10 C -0.553 4.553 11 H 0.085 0.915 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.213 4.213 19 C -0.007 4.007 20 O -0.305 6.305 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.546 -10.028 6.938 13.396 hybrid contribution 0.348 0.890 -0.793 1.242 sum -5.199 -9.138 6.145 12.178 Atomic orbital electron populations 1.21708 0.95557 1.00940 1.02379 1.21553 0.96508 0.95017 1.02177 1.22037 0.93459 0.93234 0.87597 0.91293 1.22266 0.96960 0.96304 1.02507 1.21866 0.97084 0.91117 0.87378 0.92774 1.87886 1.48175 1.47960 1.46643 1.20238 0.89543 0.83856 0.94286 1.21089 1.06063 1.14073 1.14027 0.91549 1.24949 0.94958 0.96804 0.97775 1.69970 1.14857 1.27326 1.41593 0.86300 0.79419 0.79215 0.81693 1.19478 1.20813 1.20817 1.22627 0.97734 1.02383 0.98543 1.22403 0.93787 0.82843 1.01670 1.87790 1.78866 1.25080 1.38813 0.92068 0.92822 0.93237 0.90875 0.91629 0.90996 0.90614 0.97743 0.97786 0.92692 0.90630 0.91458 0.89785 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.81 37.16 0.36 -1.38 16 2 C -0.12 -1.45 5.64 -26.73 -0.15 -1.60 16 3 C 0.09 1.48 2.50 -26.68 -0.07 1.41 16 4 H 0.07 1.23 7.82 -51.93 -0.41 0.83 16 5 C -0.14 -2.26 5.14 -26.59 -0.14 -2.40 16 6 C 0.08 1.60 2.95 -26.55 -0.08 1.52 16 7 H 0.05 1.02 7.80 -51.93 -0.40 0.62 16 8 O -0.39 -9.14 8.94 -35.23 -0.32 -9.46 16 9 C 0.20 5.29 5.51 36.01 0.20 5.49 16 10 C -0.51 -15.04 9.43 -34.44 -0.32 -15.37 16 11 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 14 Si 0.91 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.17 -2.95 5.83 -26.59 -0.15 -3.10 16 19 C 0.07 1.14 6.70 37.21 0.25 1.39 16 20 O -0.39 -6.35 9.94 -35.23 -0.35 -6.70 16 21 H 0.06 0.76 7.82 -51.93 -0.41 0.35 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.00 0.13 7.83 -51.93 -0.41 -0.27 16 29 H 0.00 0.12 8.09 -51.93 -0.42 -0.30 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.08 1.34 7.83 -51.93 -0.41 0.93 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.12 7.82 -51.93 -0.41 0.72 16 LS Contribution 278.25 15.07 4.19 4.19 Total: -1.00 -30.42 278.25 -6.74 -37.15 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -5.78 Total: -3.39 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.20 Total: -12.50 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.05 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.67 Total: -16.16 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.42 -6.74 -37.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.994 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds