Wall clock time and date at job start Mon Mar 30 2020 03:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46992 * 2 1 4 4 H 1.08997 * 109.47544 * 304.96960 * 3 2 1 5 5 C 1.53097 * 109.48843 * 184.94545 * 3 2 1 6 6 C 1.53180 * 109.21119 * 182.43325 * 5 3 2 7 7 H 1.09005 * 109.59319 * 176.78366 * 6 5 3 8 8 O 1.42907 * 109.49532 * 297.04707 * 6 5 3 9 9 C 1.42899 * 114.00073 * 209.52369 * 8 6 5 10 10 C 1.50700 * 109.47035 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99761 * 359.97438 * 10 9 8 12 12 C 1.37871 * 119.99903 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00398 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00049 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46869 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47450 * 119.99931 * 14 12 10 17 17 H 1.48505 * 109.47085 * 240.00164 * 14 12 10 18 18 C 1.53177 * 109.03525 * 56.88485 * 6 5 3 19 19 C 1.53098 * 109.21356 * 303.11207 * 18 6 5 20 20 O 1.42898 * 109.48527 * 64.99632 * 3 2 1 21 21 H 1.08996 * 109.47472 * 300.00796 * 1 2 3 22 22 H 1.09007 * 109.46738 * 60.00802 * 1 2 3 23 23 H 1.08998 * 109.46915 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47472 * 239.99204 * 2 1 3 25 25 H 1.09007 * 109.46738 * 119.99198 * 2 1 3 26 26 H 1.09002 * 109.52138 * 302.30346 * 5 3 2 27 27 H 1.09003 * 109.52113 * 62.49256 * 5 3 2 28 28 H 1.08999 * 109.46933 * 300.00194 * 9 8 6 29 29 H 1.08997 * 109.46998 * 60.00311 * 9 8 6 30 30 H 0.96997 * 120.00216 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.52487 * 183.17418 * 18 6 5 32 32 H 1.09004 * 109.52023 * 63.05037 * 18 6 5 33 33 H 1.08999 * 109.47354 * 177.55660 * 19 18 6 34 34 H 1.08998 * 109.47939 * 297.58076 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6058 1.9815 -0.8421 5 6 3.5659 1.4449 -0.1244 6 6 4.0745 2.8884 -0.0626 7 1 5.1641 2.8937 -0.0933 8 8 3.5598 3.6234 -1.1749 9 6 4.4100 4.6848 -1.6138 10 6 3.7720 5.3883 -2.7839 11 1 2.8133 5.0577 -3.1554 12 6 4.4122 6.4540 -3.3800 13 7 5.5795 6.8569 -2.9273 14 14 3.6217 7.3256 -4.8308 15 1 2.3199 6.6838 -5.1444 16 1 3.4006 8.7538 -4.4897 17 1 4.5166 7.2317 -6.0122 18 6 3.5954 3.5315 1.2424 19 6 2.0683 3.4486 1.3140 20 8 1.6620 2.0818 1.2209 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9990 0.8716 0.6953 27 1 3.8545 0.9973 -1.0755 28 1 4.5557 5.3941 -0.7992 29 1 5.3741 4.2763 -1.9167 30 1 6.0300 7.6064 -3.3470 31 1 3.9051 4.5762 1.2689 32 1 4.0291 3.0014 2.0904 33 1 1.7257 3.8660 2.2609 34 1 1.6345 4.0140 0.4893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260290023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:24 Heat of formation + Delta-G solvation = -138.365598 kcal Electronic energy + Delta-G solvation = -14920.444247 eV Core-core repulsion = 12430.694015 eV Total energy + Delta-G solvation = -2489.750232 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.73922 -38.12422 -35.05746 -34.85151 -33.21460 -30.76853 -29.28754 -25.96288 -24.82990 -24.40579 -22.23081 -20.94801 -18.68663 -17.44523 -17.32331 -17.01837 -16.46482 -16.15656 -15.61777 -15.14838 -14.58530 -14.26908 -14.10586 -13.79963 -13.77831 -12.97514 -12.80104 -12.73958 -12.64317 -12.51746 -12.14848 -12.07629 -11.82601 -11.75640 -11.32717 -11.10523 -10.88141 -10.34619 -10.15782 -8.35127 -6.47571 1.37916 1.38989 1.53670 2.31994 2.85758 2.98713 3.13656 3.70924 3.89778 3.94856 4.04362 4.26217 4.29335 4.48449 4.50368 4.62763 4.72408 4.72685 4.87267 4.89620 4.95370 5.02424 5.11034 5.12899 5.15244 5.21382 5.33087 5.47995 5.52641 5.93734 6.30899 6.51160 6.79727 7.24738 8.77291 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040137 B = 0.007085 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.440155 B = 3950.932214 C = 4238.859674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.091 3.909 4 H 0.038 0.962 5 C -0.136 4.136 6 C 0.068 3.932 7 H 0.050 0.950 8 O -0.398 6.398 9 C 0.212 3.788 10 C -0.547 4.547 11 H 0.060 0.940 12 C 0.007 3.993 13 N -0.930 5.930 14 Si 0.981 3.019 15 H -0.265 1.265 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.170 4.170 19 C 0.071 3.929 20 O -0.385 6.385 21 H 0.051 0.949 22 H 0.044 0.956 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.077 0.923 28 H -0.014 1.014 29 H -0.017 1.017 30 H 0.271 0.729 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.081 -10.859 7.036 14.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C 0.034 3.966 4 H 0.056 0.944 5 C -0.174 4.174 6 C 0.009 3.991 7 H 0.068 0.932 8 O -0.318 6.318 9 C 0.137 3.863 10 C -0.585 4.585 11 H 0.078 0.922 12 C -0.191 4.191 13 N -0.569 5.569 14 Si 0.804 3.196 15 H -0.189 1.189 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.208 4.208 19 C -0.006 4.006 20 O -0.304 6.304 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.004 0.996 29 H 0.001 0.999 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.131 0.869 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.221 -10.877 7.071 14.388 hybrid contribution 0.588 1.105 -0.767 1.468 sum -5.634 -9.772 6.304 12.921 Atomic orbital electron populations 1.21697 0.95014 1.02198 1.01540 1.21564 0.96981 0.92654 1.03531 1.22123 0.93248 0.94858 0.86400 0.94354 1.22275 0.97160 0.94142 1.03806 1.22282 0.97172 0.92732 0.86869 0.93188 1.87853 1.47879 1.47390 1.48699 1.19815 0.88944 0.84233 0.93295 1.21400 1.06318 1.15414 1.15374 0.92213 1.25942 0.95349 0.97158 1.00667 1.70071 1.16078 1.27814 1.42948 0.85161 0.78598 0.78056 0.77758 1.18923 1.19591 1.19566 1.22592 0.98262 1.01668 0.98279 1.22416 0.93239 0.82874 1.02032 1.87802 1.78905 1.24782 1.38921 0.92970 0.93640 0.90919 0.89492 0.90211 0.88127 0.90456 0.99625 0.99913 0.92015 0.92146 0.88549 0.86921 0.94951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.81 71.98 0.71 -2.47 16 2 C -0.11 -2.51 5.64 30.60 0.17 -2.34 16 3 C 0.09 2.78 2.50 30.63 0.08 2.86 16 4 H 0.04 1.40 7.82 -2.39 -0.02 1.38 16 5 C -0.14 -4.15 5.14 30.69 0.16 -3.99 16 6 C 0.07 2.56 2.95 30.71 0.09 2.65 16 7 H 0.05 1.92 7.80 -2.38 -0.02 1.90 16 8 O -0.40 -19.47 8.94 -148.98 -1.33 -20.80 16 9 C 0.21 11.99 5.51 71.24 0.39 12.38 16 10 C -0.55 -32.83 9.43 25.60 0.24 -32.59 16 11 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 12 C 0.01 0.43 5.46 84.65 0.46 0.89 16 13 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 14 Si 0.98 44.55 29.54 68.60 2.03 46.57 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 18 C -0.17 -5.65 5.83 30.69 0.18 -5.47 16 19 C 0.07 2.28 6.70 72.01 0.48 2.77 16 20 O -0.38 -12.12 9.94 -148.98 -1.48 -13.60 16 21 H 0.05 1.21 7.82 -2.39 -0.02 1.19 16 22 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 28 H -0.01 -0.82 7.83 -2.39 -0.02 -0.84 16 29 H -0.02 -1.00 8.09 -2.39 -0.02 -1.02 16 30 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.06 2.18 7.83 -2.39 -0.02 2.16 16 32 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 33 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.03 1.22 7.82 -2.39 -0.02 1.20 16 Total: -1.00 -65.73 278.25 3.50 -62.23 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.04 Total: 6.65 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 2.96 Total: -25.30 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.28 Total: -55.75 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -2.81 Total: -34.40 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -65.73 3.50 -62.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260290023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.140 kcal (2) G-P(sol) polarization free energy of solvation -65.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds