Wall clock time and date at job start Mon Mar 30 2020 02:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 119.99966 * 2 1 4 4 O 1.21584 * 120.00434 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00188 * 179.97438 * 3 2 1 6 6 C 1.47579 * 134.49439 * 179.97438 * 5 3 2 7 7 C 1.53950 * 86.11621 * 204.63969 * 6 5 3 8 8 C 1.53004 * 113.73988 * 221.94050 * 7 6 5 9 9 O 1.42901 * 109.46860 * 183.07539 * 8 7 6 10 10 C 1.34921 * 117.00094 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99879 * 359.97438 * 10 9 8 12 12 C 1.38634 * 120.00450 * 179.97438 * 10 9 8 13 13 N 1.31587 * 120.00144 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99887 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.46960 * 89.99617 * 14 12 10 16 16 H 1.48492 * 109.47133 * 209.99723 * 14 12 10 17 17 H 1.48498 * 109.46951 * 329.99647 * 14 12 10 18 18 C 1.47925 * 134.49772 * 359.97438 * 5 3 2 19 19 H 1.08996 * 109.47529 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47472 * 300.00566 * 1 2 3 21 21 H 1.09006 * 109.47041 * 60.00112 * 1 2 3 22 22 H 0.97005 * 120.00077 * 179.97438 * 2 1 3 23 23 H 1.09003 * 113.77049 * 90.34034 * 6 5 3 24 24 H 1.08993 * 113.77081 * 318.93795 * 6 5 3 25 25 H 1.09002 * 113.74276 * 90.74001 * 7 6 5 26 26 H 1.08998 * 109.46823 * 303.07465 * 8 7 6 27 27 H 1.08998 * 109.46745 * 63.07477 * 8 7 6 28 28 H 0.96995 * 119.99631 * 179.97438 * 13 12 10 29 29 H 1.09006 * 113.87423 * 41.10256 * 18 5 3 30 30 H 1.08997 * 113.77410 * 269.60428 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4866 1.1672 0.0005 6 6 4.5209 2.2200 0.0002 7 6 5.4440 1.1668 -0.6391 8 6 6.8656 1.1689 -0.0733 9 8 7.6595 0.2112 -0.7766 10 6 8.9483 0.0869 -0.3971 11 1 9.3362 0.6971 0.4053 12 6 9.7746 -0.8240 -1.0369 13 7 11.0316 -0.9448 -0.6670 14 14 9.1039 -1.8788 -2.4250 15 1 9.2942 -1.1743 -3.7183 16 1 9.8281 -3.1748 -2.4561 17 1 7.6564 -2.1257 -2.2041 18 6 4.5235 0.1122 0.0016 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.9500 -0.8401 0.0004 23 1 4.8326 2.5299 0.9977 24 1 4.2925 3.0600 -0.6556 25 1 5.4203 1.1660 -1.7288 26 1 7.3023 2.1605 -0.1921 27 1 6.8358 0.9094 0.9849 28 1 11.6096 -1.5824 -1.1145 29 1 4.2972 -0.7294 -0.6532 30 1 4.8360 -0.1957 0.9994 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260312319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:49 Heat of formation + Delta-G solvation = -51.012759 kcal Electronic energy + Delta-G solvation = -14073.753147 eV Core-core repulsion = 11484.250475 eV Total energy + Delta-G solvation = -2589.502672 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.46282 -39.46056 -38.00542 -35.56750 -34.11009 -31.82005 -28.40871 -27.21486 -26.55501 -25.12260 -21.89794 -20.76034 -19.63164 -19.05511 -17.76015 -17.41066 -16.89270 -16.19504 -15.81617 -15.56297 -15.18546 -14.60989 -14.36428 -14.01182 -13.75402 -13.56033 -13.22272 -13.03678 -12.77325 -12.35683 -12.02521 -11.83665 -11.44611 -11.42688 -11.15060 -10.32957 -10.32237 -9.57690 -8.23024 -5.93670 1.44015 1.46566 1.47330 1.65030 2.06299 2.48058 2.89193 3.09494 3.16708 3.63704 3.97694 4.28526 4.32496 4.41707 4.46768 4.57426 4.61801 4.63696 4.71435 4.85439 4.88132 4.93097 5.28222 5.46199 5.64045 6.15565 6.18799 6.94673 7.16208 7.49445 7.84675 8.92788 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.054230 B = 0.006066 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.190731 B = 4614.524167 C = 4960.114773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.740 5.740 3 C 0.717 3.283 4 O -0.641 6.641 5 N -0.667 5.667 6 C 0.139 3.861 7 C -0.110 4.110 8 C 0.087 3.913 9 O -0.344 6.344 10 C -0.356 4.356 11 H 0.050 0.950 12 C -0.016 4.016 13 N -0.956 5.956 14 Si 0.976 3.024 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.253 1.253 18 C 0.115 3.885 19 H 0.113 0.887 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.411 0.589 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.273 0.727 29 H 0.096 0.904 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.968 -1.114 0.550 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.395 5.395 3 C 0.420 3.580 4 O -0.523 6.523 5 N -0.406 5.406 6 C 0.017 3.983 7 C -0.130 4.130 8 C 0.009 3.991 9 O -0.261 6.261 10 C -0.435 4.435 11 H 0.068 0.932 12 C -0.209 4.209 13 N -0.604 5.604 14 Si 0.800 3.200 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.176 1.176 18 C -0.007 4.007 19 H 0.132 0.868 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.246 0.754 23 H 0.116 0.884 24 H 0.103 0.897 25 H 0.122 0.878 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.653 -0.551 0.377 18.665 hybrid contribution 0.604 -0.408 -0.112 0.737 sum -18.049 -0.959 0.265 18.076 Atomic orbital electron populations 1.21558 0.76900 1.04148 1.01294 1.44873 1.08399 1.06699 1.79536 1.15713 0.80256 0.84549 0.77491 1.90865 1.67898 1.32468 1.61107 1.49230 1.01906 1.12176 1.77245 1.23061 0.81641 0.92060 1.01580 1.22975 0.91502 0.96792 1.01681 1.22226 0.89702 0.92076 0.95063 1.85134 1.21138 1.59437 1.60375 1.20336 0.84959 1.21029 1.17181 0.93249 1.25231 0.94803 0.99370 1.01486 1.69807 1.06363 1.39184 1.44998 0.85101 0.79267 0.77267 0.78337 1.20301 1.21029 1.17645 1.23460 0.82830 0.92573 1.01824 0.86809 0.93307 0.93406 0.75369 0.88409 0.89661 0.87778 0.94318 0.93826 0.91789 0.88585 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.69 10.70 127.77 1.37 3.06 16 2 N -0.74 -15.26 5.72 -500.20 -2.86 -18.12 16 3 C 0.72 20.96 8.76 179.05 1.57 22.53 16 4 O -0.64 -24.07 17.07 -3.98 -0.07 -24.14 16 5 N -0.67 -17.56 3.62 -853.71 -3.09 -20.64 16 6 C 0.14 3.50 8.40 86.49 0.73 4.22 16 7 C -0.11 -3.06 4.19 -10.13 -0.04 -3.11 16 8 C 0.09 3.12 5.86 71.98 0.42 3.54 16 9 O -0.34 -16.62 8.61 -81.90 -0.70 -17.32 16 10 C -0.36 -20.34 10.35 67.91 0.70 -19.64 16 11 H 0.05 3.02 8.00 -2.91 -0.02 3.00 16 12 C -0.02 -0.93 5.49 84.82 0.47 -0.46 16 13 N -0.96 -58.72 13.97 21.61 0.30 -58.42 16 14 Si 0.98 45.51 28.62 68.60 1.96 47.48 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.25 -11.15 7.11 99.48 0.71 -10.45 16 18 C 0.11 2.71 8.02 86.42 0.69 3.41 16 19 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 20 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 21 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 22 H 0.41 6.29 8.44 -92.70 -0.78 5.50 16 23 H 0.10 2.20 8.10 -2.39 -0.02 2.18 16 24 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 1.51 7.88 -2.39 -0.02 1.49 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.10 2.17 7.92 -2.39 -0.02 2.15 16 Total: -1.00 -73.71 266.34 1.80 -71.91 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.35 Total: 5.69 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.90 Total: 13.55 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -5.64 Total: -97.18 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.77 Total: -41.46 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.96 Total: 47.48 kcal Total: -73.71 1.80 -71.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260312319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.898 kcal (2) G-P(sol) polarization free energy of solvation -73.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds