Wall clock time and date at job start Mon Mar 30 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46954 * 2 1 4 4 C 1.50697 * 109.47319 * 120.00305 * 2 1 3 5 5 H 1.08006 * 120.00041 * 356.40087 * 4 2 1 6 6 C 1.37867 * 120.00119 * 176.39590 * 4 2 1 7 7 N 1.31518 * 120.00194 * 352.68745 * 6 4 2 8 8 Si 1.86804 * 120.00121 * 172.41306 * 6 4 2 9 9 H 1.48496 * 109.47038 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47078 * 120.00076 * 8 6 4 11 11 H 1.48505 * 109.47225 * 239.99839 * 8 6 4 12 12 O 1.42901 * 109.46690 * 240.00359 * 2 1 3 13 13 C 1.42895 * 114.00448 * 60.00031 * 12 2 1 14 14 H 1.09002 * 109.48170 * 309.97773 * 13 12 2 15 15 C 1.53088 * 109.48238 * 189.94095 * 13 12 2 16 16 C 1.53177 * 109.16420 * 182.40876 * 15 13 12 17 17 C 1.53179 * 109.03928 * 56.97792 * 16 15 13 18 18 C 1.53095 * 109.16179 * 303.02281 * 17 16 15 19 19 O 1.42903 * 109.41685 * 57.60797 * 18 17 16 20 20 H 1.09003 * 109.47132 * 292.99286 * 1 2 3 21 21 H 1.08996 * 109.47337 * 53.00254 * 1 2 3 22 22 H 1.09003 * 109.46787 * 173.00156 * 1 2 3 23 23 H 1.09003 * 109.47052 * 188.16128 * 3 2 1 24 24 H 1.09002 * 109.47441 * 308.16044 * 3 2 1 25 25 H 1.09005 * 109.46987 * 68.16242 * 3 2 1 26 26 H 0.96997 * 119.99831 * 2.04419 * 7 6 4 27 27 H 1.09002 * 109.52549 * 302.31277 * 15 13 12 28 28 H 1.09001 * 109.52240 * 62.50199 * 15 13 12 29 29 H 1.09004 * 109.54182 * 297.11061 * 16 15 13 30 30 H 1.09004 * 109.54860 * 176.84906 * 16 15 13 31 31 H 1.09001 * 109.52606 * 183.11529 * 17 16 15 32 32 H 1.09002 * 109.52245 * 62.92800 * 17 16 15 33 33 H 1.08996 * 109.47965 * 297.62523 * 18 17 16 34 34 H 1.08999 * 109.47995 * 177.58926 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 1.3323 -1.0698 1.9702 6 6 3.3856 -0.9018 1.4117 7 7 4.2279 -0.5954 0.4492 8 14 4.0236 -1.5891 3.0273 9 1 2.8819 -1.8447 3.9417 10 1 4.7477 -2.8603 2.7729 11 1 4.9485 -0.6090 3.6514 12 8 2.0063 -0.6736 -1.1669 13 6 1.5846 -0.0773 -2.3951 14 1 0.5068 0.0832 -2.3701 15 6 1.9359 -1.0057 -3.5605 16 6 1.5356 -0.3334 -4.8773 17 6 2.2413 1.0222 -4.9810 18 6 1.8781 1.8723 -3.7606 19 8 2.2490 1.1760 -2.5692 20 1 -0.3633 0.4014 0.9460 21 1 -0.3634 0.6184 -0.8207 22 1 -0.3633 -1.0201 -0.1252 23 1 3.1202 1.4460 -0.1459 24 1 1.5624 1.9967 -0.8080 25 1 1.8006 1.9124 0.9540 26 1 3.8999 -0.2072 -0.3770 27 1 3.0087 -1.1991 -3.5616 28 1 1.3955 -1.9462 -3.4526 29 1 0.4559 -0.1850 -4.8974 30 1 1.8338 -0.9647 -5.7145 31 1 1.9192 1.5320 -5.8890 32 1 3.3202 0.8699 -5.0108 33 1 0.8041 2.0582 -3.7537 34 1 2.4112 2.8219 -3.8075 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260340421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:50 Heat of formation + Delta-G solvation = -109.955300 kcal Electronic energy + Delta-G solvation = -15751.780603 eV Core-core repulsion = 13263.262333 eV Total energy + Delta-G solvation = -2488.518269 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.17156 -36.78532 -33.29428 -32.84655 -30.63461 -29.42179 -26.05964 -24.67047 -24.16459 -22.72504 -20.03843 -19.56014 -17.07240 -15.99361 -15.83727 -15.11342 -14.43814 -13.99832 -13.67006 -13.28675 -13.06981 -12.65300 -12.31490 -12.02935 -11.51899 -11.11864 -10.96822 -10.92166 -10.76848 -10.68398 -10.56864 -10.42899 -10.11395 -10.02765 -9.84368 -8.84714 -8.60010 -8.29781 -8.20525 -6.15617 -4.00048 3.49702 3.53557 3.67043 4.22382 4.61161 4.77977 5.00399 5.08395 5.21640 5.44408 5.50580 5.62900 5.74196 5.87995 5.90733 6.05538 6.14611 6.23123 6.24410 6.34479 6.40176 6.53808 6.62285 6.86041 6.93865 6.99729 7.19862 7.69214 7.84667 8.28151 8.48039 8.80020 9.06823 9.83363 11.22372 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045708 B = 0.009533 C = 0.009177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.433960 B = 2936.366975 C = 3050.423192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.214 3.786 3 C -0.152 4.152 4 C -0.601 4.601 5 H 0.056 0.944 6 C 0.035 3.965 7 N -0.890 5.890 8 Si 1.070 2.930 9 H -0.290 1.290 10 H -0.288 1.288 11 H -0.287 1.287 12 O -0.347 6.347 13 C 0.243 3.757 14 H 0.037 0.963 15 C -0.141 4.141 16 C -0.118 4.118 17 C -0.157 4.157 18 C 0.066 3.934 19 O -0.388 6.388 20 H 0.053 0.947 21 H 0.028 0.972 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.295 0.705 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 2.901 -8.819 10.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.177 3.823 3 C -0.210 4.210 4 C -0.638 4.638 5 H 0.075 0.925 6 C -0.175 4.175 7 N -0.527 5.527 8 Si 0.899 3.101 9 H -0.216 1.216 10 H -0.214 1.214 11 H -0.213 1.213 12 O -0.267 6.267 13 C 0.147 3.853 14 H 0.054 0.946 15 C -0.179 4.179 16 C -0.155 4.155 17 C -0.194 4.194 18 C -0.011 4.011 19 O -0.309 6.309 20 H 0.073 0.927 21 H 0.047 0.953 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.742 2.344 -7.892 9.043 hybrid contribution -1.799 0.558 -1.076 2.169 sum -5.541 2.902 -8.968 10.934 Atomic orbital electron populations 1.22311 0.99603 0.99915 0.99730 1.19498 0.88530 0.90590 0.83641 1.22463 1.02552 0.97662 0.98288 1.21802 0.94553 1.44472 1.02974 0.92543 1.25741 0.93446 0.95249 1.03101 1.70526 1.38857 1.36110 1.07172 0.83561 0.75292 0.76546 0.74726 1.21599 1.21438 1.21328 1.88510 1.75534 1.50824 1.11784 1.22816 0.92619 0.81930 0.87931 0.94555 1.22008 1.03426 0.99039 0.93405 1.21570 0.99957 0.96424 0.97586 1.22217 1.01792 0.96748 0.98690 1.22370 0.98825 0.95178 0.84736 1.88123 1.68332 1.34489 1.39999 0.92749 0.95319 0.93493 0.91975 0.94689 0.94418 0.89042 0.90426 0.90905 0.92209 0.91555 0.91446 0.90960 0.94087 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 8.01 37.16 0.30 -3.25 16 2 C 0.21 5.62 0.69 -91.77 -0.06 5.56 16 3 C -0.15 -3.84 7.00 37.16 0.26 -3.58 16 4 C -0.60 -17.47 8.20 -34.45 -0.28 -17.75 16 5 H 0.06 1.62 7.76 -52.48 -0.41 1.22 16 6 C 0.03 1.02 5.22 -17.82 -0.09 0.92 16 7 N -0.89 -27.74 12.99 55.43 0.72 -27.02 16 8 Si 1.07 25.84 29.91 -169.99 -5.08 20.75 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 O -0.35 -9.14 7.97 -59.04 -0.47 -9.61 16 13 C 0.24 5.13 2.82 37.20 0.10 5.24 16 14 H 0.04 0.74 6.11 -51.93 -0.32 0.43 16 15 C -0.14 -2.50 5.79 -26.59 -0.15 -2.66 16 16 C -0.12 -1.60 6.03 -26.55 -0.16 -1.76 16 17 C -0.16 -2.07 6.14 -26.59 -0.16 -2.23 16 18 C 0.07 1.01 6.84 37.21 0.25 1.27 16 19 O -0.39 -8.06 7.42 -59.04 -0.44 -8.50 16 20 H 0.05 1.17 8.13 -51.93 -0.42 0.75 16 21 H 0.03 0.57 6.68 -51.93 -0.35 0.22 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.06 1.73 6.17 -51.93 -0.32 1.41 16 24 H 0.03 0.80 6.21 -51.93 -0.32 0.48 16 25 H 0.04 0.92 8.13 -51.93 -0.42 0.50 16 26 H 0.29 9.28 4.69 -40.82 -0.19 9.08 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 263.51 15.07 3.97 3.97 Total: -1.00 -32.02 263.51 -6.65 -38.67 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.35 Total: -0.01 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 0.00 Total: -18.25 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.72 Total: -27.02 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.91 Total: -18.11 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.02 -6.65 -38.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260340421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.287 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds