Wall clock time and date at job start Mon Mar 30 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46954 * 2 1 4 4 C 1.50697 * 109.47319 * 120.00305 * 2 1 3 5 5 H 1.08006 * 120.00041 * 356.40087 * 4 2 1 6 6 C 1.37867 * 120.00119 * 176.39590 * 4 2 1 7 7 N 1.31518 * 120.00194 * 352.68745 * 6 4 2 8 8 Si 1.86804 * 120.00121 * 172.41306 * 6 4 2 9 9 H 1.48496 * 109.47038 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47078 * 120.00076 * 8 6 4 11 11 H 1.48505 * 109.47225 * 239.99839 * 8 6 4 12 12 O 1.42901 * 109.46690 * 240.00359 * 2 1 3 13 13 C 1.42895 * 114.00448 * 60.00031 * 12 2 1 14 14 H 1.09002 * 109.48170 * 309.97773 * 13 12 2 15 15 C 1.53088 * 109.48238 * 189.94095 * 13 12 2 16 16 C 1.53177 * 109.16420 * 182.40876 * 15 13 12 17 17 C 1.53179 * 109.03928 * 56.97792 * 16 15 13 18 18 C 1.53095 * 109.16179 * 303.02281 * 17 16 15 19 19 O 1.42903 * 109.41685 * 57.60797 * 18 17 16 20 20 H 1.09003 * 109.47132 * 292.99286 * 1 2 3 21 21 H 1.08996 * 109.47337 * 53.00254 * 1 2 3 22 22 H 1.09003 * 109.46787 * 173.00156 * 1 2 3 23 23 H 1.09003 * 109.47052 * 188.16128 * 3 2 1 24 24 H 1.09002 * 109.47441 * 308.16044 * 3 2 1 25 25 H 1.09005 * 109.46987 * 68.16242 * 3 2 1 26 26 H 0.96997 * 119.99831 * 2.04419 * 7 6 4 27 27 H 1.09002 * 109.52549 * 302.31277 * 15 13 12 28 28 H 1.09001 * 109.52240 * 62.50199 * 15 13 12 29 29 H 1.09004 * 109.54182 * 297.11061 * 16 15 13 30 30 H 1.09004 * 109.54860 * 176.84906 * 16 15 13 31 31 H 1.09001 * 109.52606 * 183.11529 * 17 16 15 32 32 H 1.09002 * 109.52245 * 62.92800 * 17 16 15 33 33 H 1.08996 * 109.47965 * 297.62523 * 18 17 16 34 34 H 1.08999 * 109.47995 * 177.58926 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 1.3323 -1.0698 1.9702 6 6 3.3856 -0.9018 1.4117 7 7 4.2279 -0.5954 0.4492 8 14 4.0236 -1.5891 3.0273 9 1 2.8819 -1.8447 3.9417 10 1 4.7477 -2.8603 2.7729 11 1 4.9485 -0.6090 3.6514 12 8 2.0063 -0.6736 -1.1669 13 6 1.5846 -0.0773 -2.3951 14 1 0.5068 0.0832 -2.3701 15 6 1.9359 -1.0057 -3.5605 16 6 1.5356 -0.3334 -4.8773 17 6 2.2413 1.0222 -4.9810 18 6 1.8781 1.8723 -3.7606 19 8 2.2490 1.1760 -2.5692 20 1 -0.3633 0.4014 0.9460 21 1 -0.3634 0.6184 -0.8207 22 1 -0.3633 -1.0201 -0.1252 23 1 3.1202 1.4460 -0.1459 24 1 1.5624 1.9967 -0.8080 25 1 1.8006 1.9124 0.9540 26 1 3.8999 -0.2072 -0.3770 27 1 3.0087 -1.1991 -3.5616 28 1 1.3955 -1.9462 -3.4526 29 1 0.4559 -0.1850 -4.8974 30 1 1.8338 -0.9647 -5.7145 31 1 1.9192 1.5320 -5.8890 32 1 3.3202 0.8699 -5.0108 33 1 0.8041 2.0582 -3.7537 34 1 2.4112 2.8219 -3.8075 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260340421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:50 Heat of formation + Delta-G solvation = -129.926433 kcal Electronic energy + Delta-G solvation = -15752.646616 eV Core-core repulsion = 13263.262333 eV Total energy + Delta-G solvation = -2489.384283 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.72390 -38.53583 -34.89130 -34.58356 -32.58154 -30.88023 -27.99822 -26.72920 -25.58148 -24.16281 -21.62092 -21.21269 -19.12841 -17.57634 -17.28957 -16.90072 -15.77972 -15.63232 -15.41598 -14.96912 -14.73312 -14.21728 -13.76946 -13.63157 -13.33640 -12.86168 -12.78410 -12.66502 -12.49543 -12.38856 -12.02040 -11.89452 -11.89118 -11.82776 -11.34695 -10.67221 -10.44132 -10.24066 -10.20200 -8.43425 -6.29819 1.53925 1.63507 1.79654 2.59487 2.75913 3.16287 3.50494 3.82772 3.89637 4.04090 4.10407 4.20504 4.40933 4.44584 4.52614 4.61804 4.71568 4.79573 4.85863 4.93345 4.94536 4.98855 5.04022 5.07135 5.16631 5.24760 5.35988 5.67272 6.13458 6.22448 6.40995 6.74605 6.96326 7.63605 8.92582 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045708 B = 0.009533 C = 0.009177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.433960 B = 2936.366975 C = 3050.423192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.200 3.800 3 C -0.135 4.135 4 C -0.621 4.621 5 H 0.052 0.948 6 C -0.015 4.015 7 N -0.921 5.921 8 Si 1.116 2.884 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.279 1.279 12 O -0.382 6.382 13 C 0.239 3.761 14 H 0.048 0.952 15 C -0.139 4.139 16 C -0.110 4.110 17 C -0.152 4.152 18 C 0.054 3.946 19 O -0.422 6.422 20 H 0.059 0.941 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.028 0.972 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.282 0.718 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.590 3.239 -9.822 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 C -0.193 4.193 4 C -0.658 4.658 5 H 0.070 0.930 6 C -0.219 4.219 7 N -0.558 5.558 8 Si 0.938 3.062 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.204 1.204 12 O -0.303 6.303 13 C 0.143 3.857 14 H 0.065 0.935 15 C -0.177 4.177 16 C -0.147 4.147 17 C -0.189 4.189 18 C -0.023 4.023 19 O -0.344 6.344 20 H 0.078 0.922 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.001 2.695 -8.914 10.570 hybrid contribution -1.467 0.511 -0.859 1.775 sum -6.468 3.206 -9.774 12.151 Atomic orbital electron populations 1.22169 0.96909 1.00492 1.01023 1.19546 0.90702 0.90183 0.83253 1.22275 1.00378 0.97858 0.98763 1.22213 0.94819 1.44190 1.04543 0.93024 1.27162 0.94219 0.95021 1.05466 1.70635 1.39279 1.38368 1.07521 0.82980 0.75584 0.76192 0.71429 1.19562 1.20930 1.20441 1.88380 1.76362 1.51979 1.13542 1.23032 0.92991 0.82894 0.86745 0.93456 1.22031 1.01857 0.99118 0.94703 1.21580 1.01093 0.96563 0.95496 1.22197 1.01070 0.96484 0.99170 1.22749 1.00190 0.95575 0.83737 1.88051 1.68916 1.34498 1.42920 0.92160 0.92986 0.93536 0.95295 0.92692 0.94684 0.90444 0.92996 0.90677 0.90360 0.89222 0.87690 0.92262 0.92311 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.49 8.01 71.98 0.58 -5.91 16 2 C 0.20 10.56 0.69 -11.54 -0.01 10.55 16 3 C -0.13 -6.88 7.00 71.98 0.50 -6.38 16 4 C -0.62 -36.49 8.20 25.60 0.21 -36.28 16 5 H 0.05 2.99 7.76 -2.91 -0.02 2.96 16 6 C -0.02 -0.91 5.22 84.65 0.44 -0.47 16 7 N -0.92 -58.96 12.99 21.44 0.28 -58.68 16 8 Si 1.12 52.31 29.91 68.60 2.05 54.36 16 9 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 O -0.38 -20.48 7.97 -126.21 -1.01 -21.48 16 13 C 0.24 9.96 2.82 72.01 0.20 10.16 16 14 H 0.05 1.84 6.11 -2.39 -0.01 1.83 16 15 C -0.14 -4.84 5.79 30.68 0.18 -4.66 16 16 C -0.11 -2.65 6.03 30.71 0.19 -2.47 16 17 C -0.15 -3.55 6.14 30.69 0.19 -3.36 16 18 C 0.05 1.51 6.84 72.01 0.49 2.01 16 19 O -0.42 -17.31 7.42 -126.21 -0.94 -18.25 16 20 H 0.06 2.51 8.13 -2.39 -0.02 2.49 16 21 H 0.05 1.98 6.68 -2.39 -0.02 1.96 16 22 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.03 1.63 6.17 -2.39 -0.01 1.62 16 24 H 0.05 2.51 6.21 -2.39 -0.01 2.49 16 25 H 0.03 1.72 8.13 -2.38 -0.02 1.70 16 26 H 0.28 18.46 4.69 -92.71 -0.44 18.02 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -70.65 263.51 4.75 -65.91 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 1.39 Total: 14.96 kcal Atomic # 6 Polarization: -39.79 SS G_CDS: 2.97 Total: -36.82 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.28 Total: -58.68 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.94 Total: -39.73 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 2.05 Total: 54.36 kcal Total: -70.65 4.75 -65.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260340421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.020 kcal (2) G-P(sol) polarization free energy of solvation -70.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds