Wall clock time and date at job start Mon Mar 30 2020 03:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47390 * 2 1 4 4 C 1.50698 * 109.47101 * 120.00182 * 2 1 3 5 5 H 1.08003 * 120.00291 * 119.99504 * 4 2 1 6 6 C 1.37874 * 119.99955 * 300.00113 * 4 2 1 7 7 N 1.31516 * 120.00113 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00192 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47114 * 89.99808 * 8 6 4 10 10 H 1.48501 * 109.47007 * 209.99957 * 8 6 4 11 11 H 1.48499 * 109.46835 * 329.99546 * 8 6 4 12 12 O 1.42908 * 109.47045 * 239.99895 * 2 1 3 13 13 C 1.42898 * 113.99749 * 183.84287 * 12 2 1 14 14 H 1.09009 * 109.48162 * 45.61531 * 13 12 2 15 15 C 1.53093 * 109.48051 * 165.63520 * 13 12 2 16 16 C 1.53171 * 109.16510 * 177.59543 * 15 13 12 17 17 C 1.53176 * 109.03719 * 303.01821 * 16 15 13 18 18 C 1.53096 * 109.16433 * 56.97831 * 17 16 15 19 19 O 1.42898 * 109.42524 * 302.40210 * 18 17 16 20 20 H 1.08998 * 109.47154 * 185.94202 * 1 2 3 21 21 H 1.09005 * 109.46975 * 65.94445 * 1 2 3 22 22 H 1.08993 * 109.47243 * 305.94875 * 1 2 3 23 23 H 1.09008 * 109.46933 * 52.97380 * 3 2 1 24 24 H 1.08996 * 109.47380 * 172.97642 * 3 2 1 25 25 H 1.09007 * 109.47230 * 292.97976 * 3 2 1 26 26 H 0.97000 * 120.00546 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.52027 * 297.49877 * 15 13 12 28 28 H 1.09004 * 109.52004 * 57.68225 * 15 13 12 29 29 H 1.09000 * 109.54774 * 62.88427 * 16 15 13 30 30 H 1.09000 * 109.54511 * 183.06343 * 16 15 13 31 31 H 1.08998 * 109.53002 * 176.88841 * 17 16 15 32 32 H 1.09010 * 109.52183 * 297.08133 * 17 16 15 33 33 H 1.09004 * 109.47742 * 62.37272 * 18 17 16 34 34 H 1.09000 * 109.48194 * 182.39933 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.6304 -0.5441 4.4118 10 1 1.3443 -0.9491 5.1122 11 1 2.4879 -2.5654 3.7122 12 8 2.0063 -0.6737 -1.1668 13 6 3.4281 -0.8064 -1.2216 14 1 3.7995 -1.1417 -0.2532 15 6 3.8043 -1.8309 -2.2952 16 6 5.3303 -1.9232 -2.3894 17 6 5.8975 -0.5322 -2.6892 18 6 5.4404 0.4422 -1.6004 19 8 4.0126 0.4570 -1.5447 20 1 -0.3633 -1.0221 0.1064 21 1 -0.3633 0.4189 -0.9385 22 1 -0.3633 0.6033 0.8319 23 1 1.5777 1.9913 0.8205 24 1 3.1227 1.4450 0.1257 25 1 1.7829 1.9188 -0.9462 26 1 0.7086 1.1612 3.4844 27 1 3.3963 -2.8055 -2.0275 28 1 3.3982 -1.5166 -3.2567 29 1 5.7329 -2.2849 -1.4433 30 1 5.6053 -2.6107 -3.1894 31 1 6.9864 -0.5780 -2.7033 32 1 5.5337 -0.1917 -3.6587 33 1 5.8383 0.1233 -0.6370 34 1 5.8058 1.4428 -1.8314 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260340426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:52 Heat of formation + Delta-G solvation = -107.955778 kcal Electronic energy + Delta-G solvation = -15629.769204 eV Core-core repulsion = 13141.337641 eV Total energy + Delta-G solvation = -2488.431564 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.98752 -36.57976 -33.21260 -33.15716 -30.53698 -29.07090 -25.59604 -25.24889 -24.16564 -22.58758 -19.97659 -19.50824 -16.94989 -15.74581 -15.45578 -15.09815 -14.41994 -14.24409 -13.74868 -13.07387 -12.87835 -12.56254 -12.17572 -11.61075 -11.42184 -11.15448 -10.95883 -10.76117 -10.72622 -10.65752 -10.45599 -10.37937 -10.20170 -10.02476 -9.67010 -9.16344 -8.65736 -8.37338 -8.08193 -6.03003 -4.12410 3.26192 3.33231 3.36339 4.26891 4.38706 4.88043 5.07011 5.15277 5.23792 5.29680 5.60570 5.67915 5.86163 5.98155 6.07134 6.15286 6.20475 6.33352 6.39492 6.68887 6.83816 6.97399 7.07004 7.19827 7.41541 7.66714 7.71911 7.85842 7.95382 8.14430 8.30675 8.55260 9.04536 9.55013 10.99533 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.033536 B = 0.010678 C = 0.009627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.721585 B = 2621.472882 C = 2907.882673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.227 3.773 3 C -0.146 4.146 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.378 6.378 13 C 0.262 3.738 14 H 0.064 0.936 15 C -0.142 4.142 16 C -0.118 4.118 17 C -0.157 4.157 18 C 0.069 3.931 19 O -0.394 6.394 20 H 0.033 0.967 21 H 0.016 0.984 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.044 0.956 25 H 0.014 0.986 26 H 0.261 0.739 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.487 -2.439 -6.519 10.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.190 3.810 3 C -0.204 4.204 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 O -0.298 6.298 13 C 0.166 3.834 14 H 0.081 0.919 15 C -0.180 4.180 16 C -0.156 4.156 17 C -0.194 4.194 18 C -0.008 4.008 19 O -0.316 6.316 20 H 0.052 0.948 21 H 0.035 0.965 22 H 0.110 0.890 23 H 0.096 0.904 24 H 0.063 0.937 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.133 -2.234 -6.531 9.926 hybrid contribution 0.657 -0.587 1.117 1.422 sum 7.790 -2.821 -5.414 9.897 Atomic orbital electron populations 1.21697 0.95735 1.00518 0.99850 1.19293 0.91431 0.89143 0.81119 1.22297 1.00497 0.98581 0.99034 1.21572 1.32384 1.12455 0.91094 0.92287 1.24829 0.94769 0.94858 0.98813 1.69846 1.36336 1.22631 1.23403 0.86579 0.78635 0.80064 0.82636 1.20669 1.21062 1.19924 1.87827 1.17019 1.77994 1.46983 1.22680 0.82786 0.82386 0.95578 0.91875 1.22046 0.95270 1.00082 1.00625 1.21561 0.95443 0.96847 1.01756 1.22229 1.00364 0.96321 1.00517 1.22344 0.82208 0.99262 0.97022 1.87969 1.18202 1.34217 1.91185 0.94805 0.96482 0.88967 0.90394 0.93742 0.96740 0.92834 0.90783 0.91121 0.91838 0.91697 0.91435 0.91298 0.93581 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 8.53 37.16 0.32 -2.76 16 2 C 0.23 6.02 0.86 -91.77 -0.08 5.94 16 3 C -0.15 -3.81 7.28 37.16 0.27 -3.54 16 4 C -0.54 -14.82 7.26 -34.44 -0.25 -15.07 16 5 H 0.06 1.62 6.54 -52.48 -0.34 1.28 16 6 C 0.07 1.89 5.15 -17.82 -0.09 1.80 16 7 N -0.88 -24.51 9.50 55.43 0.53 -23.98 16 8 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 O -0.38 -9.51 9.92 -59.04 -0.59 -10.10 16 13 C 0.26 5.63 2.78 37.21 0.10 5.74 16 14 H 0.06 1.46 5.96 -51.92 -0.31 1.15 16 15 C -0.14 -2.44 5.79 -26.59 -0.15 -2.59 16 16 C -0.12 -1.62 6.03 -26.55 -0.16 -1.78 16 17 C -0.16 -2.05 6.14 -26.59 -0.16 -2.22 16 18 C 0.07 1.09 6.84 37.21 0.25 1.35 16 19 O -0.39 -8.26 7.87 -59.04 -0.46 -8.72 16 20 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.09 2.46 6.24 -51.93 -0.32 2.14 16 23 H 0.08 2.13 6.28 -51.92 -0.33 1.80 16 24 H 0.04 1.15 6.35 -51.93 -0.33 0.82 16 25 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 264.05 15.07 3.98 3.98 Total: -1.00 -29.16 264.05 -6.94 -36.10 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.42 Total: -0.19 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 0.05 Total: -13.13 kcal Atomic # 7 Polarization: -24.51 SS G_CDS: 0.53 Total: -23.98 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -1.05 Total: -18.82 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.16 -6.94 -36.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260340426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.856 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds