Wall clock time and date at job start Mon Mar 30 2020 03:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47390 * 2 1 4 4 C 1.50698 * 109.47101 * 120.00182 * 2 1 3 5 5 H 1.08003 * 120.00291 * 119.99504 * 4 2 1 6 6 C 1.37874 * 119.99955 * 300.00113 * 4 2 1 7 7 N 1.31516 * 120.00113 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00192 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47114 * 89.99808 * 8 6 4 10 10 H 1.48501 * 109.47007 * 209.99957 * 8 6 4 11 11 H 1.48499 * 109.46835 * 329.99546 * 8 6 4 12 12 O 1.42908 * 109.47045 * 239.99895 * 2 1 3 13 13 C 1.42898 * 113.99749 * 183.84287 * 12 2 1 14 14 H 1.09009 * 109.48162 * 45.61531 * 13 12 2 15 15 C 1.53093 * 109.48051 * 165.63520 * 13 12 2 16 16 C 1.53171 * 109.16510 * 177.59543 * 15 13 12 17 17 C 1.53176 * 109.03719 * 303.01821 * 16 15 13 18 18 C 1.53096 * 109.16433 * 56.97831 * 17 16 15 19 19 O 1.42898 * 109.42524 * 302.40210 * 18 17 16 20 20 H 1.08998 * 109.47154 * 185.94202 * 1 2 3 21 21 H 1.09005 * 109.46975 * 65.94445 * 1 2 3 22 22 H 1.08993 * 109.47243 * 305.94875 * 1 2 3 23 23 H 1.09008 * 109.46933 * 52.97380 * 3 2 1 24 24 H 1.08996 * 109.47380 * 172.97642 * 3 2 1 25 25 H 1.09007 * 109.47230 * 292.97976 * 3 2 1 26 26 H 0.97000 * 120.00546 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.52027 * 297.49877 * 15 13 12 28 28 H 1.09004 * 109.52004 * 57.68225 * 15 13 12 29 29 H 1.09000 * 109.54774 * 62.88427 * 16 15 13 30 30 H 1.09000 * 109.54511 * 183.06343 * 16 15 13 31 31 H 1.08998 * 109.53002 * 176.88841 * 17 16 15 32 32 H 1.09010 * 109.52183 * 297.08133 * 17 16 15 33 33 H 1.09004 * 109.47742 * 62.37272 * 18 17 16 34 34 H 1.09000 * 109.48194 * 182.39933 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.6304 -0.5441 4.4118 10 1 1.3443 -0.9491 5.1122 11 1 2.4879 -2.5654 3.7122 12 8 2.0063 -0.6737 -1.1668 13 6 3.4281 -0.8064 -1.2216 14 1 3.7995 -1.1417 -0.2532 15 6 3.8043 -1.8309 -2.2952 16 6 5.3303 -1.9232 -2.3894 17 6 5.8975 -0.5322 -2.6892 18 6 5.4404 0.4422 -1.6004 19 8 4.0126 0.4570 -1.5447 20 1 -0.3633 -1.0221 0.1064 21 1 -0.3633 0.4189 -0.9385 22 1 -0.3633 0.6033 0.8319 23 1 1.5777 1.9913 0.8205 24 1 3.1227 1.4450 0.1257 25 1 1.7829 1.9188 -0.9462 26 1 0.7086 1.1612 3.4844 27 1 3.3963 -2.8055 -2.0275 28 1 3.3982 -1.5166 -3.2567 29 1 5.7329 -2.2849 -1.4433 30 1 5.6053 -2.6107 -3.1894 31 1 6.9864 -0.5780 -2.7033 32 1 5.5337 -0.1917 -3.6587 33 1 5.8383 0.1233 -0.6370 34 1 5.8058 1.4428 -1.8314 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260340426.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:52 Heat of formation + Delta-G solvation = -125.085191 kcal Electronic energy + Delta-G solvation = -15630.511992 eV Core-core repulsion = 13141.337641 eV Total energy + Delta-G solvation = -2489.174351 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.54129 -38.36989 -35.16625 -34.51221 -32.38390 -30.64898 -27.67151 -27.35573 -25.51957 -23.99997 -21.77505 -21.02153 -18.81821 -17.42616 -17.12289 -16.91662 -16.08886 -15.61724 -15.22190 -14.89062 -14.48552 -14.13006 -13.53293 -13.41284 -13.35449 -13.08550 -12.73084 -12.64352 -12.48148 -12.15999 -12.07750 -12.03452 -11.87067 -11.83299 -11.28284 -11.13979 -10.45540 -10.17556 -10.06927 -8.10482 -6.27052 1.39672 1.41105 1.50763 2.39605 2.75499 3.14228 3.38998 3.94711 3.95904 4.10349 4.26148 4.31599 4.57146 4.71705 4.76360 4.86832 4.90468 4.95473 4.99944 5.08465 5.10291 5.11870 5.13142 5.36248 5.39397 5.54938 5.58136 5.84357 6.03271 6.16856 6.38241 6.60808 7.01613 7.43775 8.91093 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.033536 B = 0.010678 C = 0.009627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.721585 B = 2621.472882 C = 2907.882673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.219 3.781 3 C -0.128 4.128 4 C -0.554 4.554 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.903 5.903 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.279 1.279 11 H -0.271 1.271 12 O -0.396 6.396 13 C 0.258 3.742 14 H 0.040 0.960 15 C -0.136 4.136 16 C -0.115 4.115 17 C -0.148 4.148 18 C 0.056 3.944 19 O -0.422 6.422 20 H 0.030 0.970 21 H 0.029 0.971 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.036 0.964 25 H 0.016 0.984 26 H 0.264 0.736 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.995 -3.201 -6.969 11.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.182 3.818 3 C -0.186 4.186 4 C -0.592 4.592 5 H 0.070 0.930 6 C -0.173 4.173 7 N -0.541 5.541 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.196 1.196 12 O -0.317 6.317 13 C 0.162 3.838 14 H 0.058 0.942 15 C -0.174 4.174 16 C -0.152 4.152 17 C -0.186 4.186 18 C -0.021 4.021 19 O -0.344 6.344 20 H 0.049 0.951 21 H 0.048 0.952 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.654 -2.996 -6.993 11.522 hybrid contribution 0.228 -0.306 1.221 1.280 sum 8.882 -3.302 -5.771 11.095 Atomic orbital electron populations 1.21590 0.95628 1.00066 0.99900 1.19292 0.91791 0.89189 0.81536 1.22093 0.99727 0.98486 0.98293 1.21727 1.32850 1.12596 0.92064 0.93021 1.25537 0.94866 0.95540 1.01360 1.69950 1.36676 1.23379 1.24124 0.85613 0.78235 0.78993 0.79147 1.20123 1.20441 1.19619 1.87771 1.19682 1.77963 1.46249 1.22816 0.80956 0.83791 0.96230 0.94233 1.22042 0.98148 0.98468 0.98780 1.21601 0.92438 0.98036 1.03119 1.22186 1.02334 0.94848 0.99209 1.22708 0.79653 1.01458 0.98241 1.87894 1.21183 1.34052 1.91292 0.95117 0.95201 0.90357 0.92056 0.94457 0.96519 0.92626 0.90673 0.91123 0.91637 0.88591 0.88067 0.90987 0.93889 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.91 8.53 71.98 0.61 -5.30 16 2 C 0.22 11.78 0.86 -11.54 -0.01 11.77 16 3 C -0.13 -6.78 7.28 71.98 0.52 -6.25 16 4 C -0.55 -30.94 7.26 25.60 0.19 -30.76 16 5 H 0.05 2.89 6.54 -2.91 -0.02 2.87 16 6 C 0.03 1.48 5.15 84.65 0.44 1.92 16 7 N -0.90 -50.35 9.50 21.45 0.20 -50.15 16 8 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 O -0.40 -20.14 9.92 -126.21 -1.25 -21.40 16 13 C 0.26 11.11 2.78 72.01 0.20 11.31 16 14 H 0.04 1.88 5.96 -2.38 -0.01 1.86 16 15 C -0.14 -4.50 5.79 30.68 0.18 -4.32 16 16 C -0.11 -2.79 6.03 30.71 0.19 -2.60 16 17 C -0.15 -3.41 6.14 30.69 0.19 -3.22 16 18 C 0.06 1.68 6.84 72.01 0.49 2.17 16 19 O -0.42 -17.57 7.87 -126.21 -0.99 -18.56 16 20 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 22 H 0.08 4.25 6.24 -2.39 -0.01 4.23 16 23 H 0.06 3.41 6.28 -2.38 -0.01 3.39 16 24 H 0.04 1.96 6.35 -2.39 -0.02 1.95 16 25 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 27 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.04 1.30 8.14 -2.38 -0.02 1.29 16 34 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -62.14 264.05 4.04 -58.11 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.06 Total: 12.17 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: 2.99 Total: -25.28 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.20 Total: -50.15 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -2.24 Total: -39.96 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -62.14 4.04 -58.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260340426.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.978 kcal (2) G-P(sol) polarization free energy of solvation -62.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds