Wall clock time and date at job start Mon Mar 30 2020 03:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 O 1.42894 * 109.47352 * 120.00401 * 2 1 3 5 5 C 1.42904 * 114.00476 * 113.67911 * 4 2 1 6 6 C 1.50698 * 109.61098 * 54.79017 * 5 4 2 7 7 H 1.08009 * 119.99630 * 238.43648 * 6 5 4 8 8 C 1.37876 * 120.00205 * 58.43946 * 6 5 4 9 9 N 1.31511 * 119.99890 * 185.83972 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 5.84399 * 8 6 5 11 11 H 1.48494 * 109.47207 * 93.31044 * 10 8 6 12 12 H 1.48502 * 109.46770 * 213.31116 * 10 8 6 13 13 H 1.48495 * 109.47183 * 333.30925 * 10 8 6 14 14 C 1.53181 * 109.53103 * 294.57937 * 5 4 2 15 15 C 1.53101 * 109.15973 * 297.09205 * 14 5 4 16 16 O 1.42901 * 109.42288 * 302.40972 * 15 14 5 17 17 C 1.42905 * 114.09865 * 61.15387 * 16 15 14 18 18 C 1.53092 * 109.41394 * 298.84258 * 17 16 15 19 19 H 1.08997 * 109.47439 * 176.44817 * 1 2 3 20 20 H 1.09005 * 109.47424 * 296.44764 * 1 2 3 21 21 H 1.09004 * 109.47284 * 56.44972 * 1 2 3 22 22 H 1.09000 * 109.46705 * 240.00304 * 2 1 3 23 23 H 1.09001 * 109.46875 * 184.74603 * 3 2 1 24 24 H 1.09000 * 109.47232 * 304.74061 * 3 2 1 25 25 H 1.09001 * 109.47021 * 64.74921 * 3 2 1 26 26 H 0.97005 * 120.00100 * 180.02562 * 9 8 6 27 27 H 1.09001 * 109.51105 * 177.19854 * 14 5 4 28 28 H 1.09001 * 109.53755 * 56.99898 * 14 5 4 29 29 H 1.09002 * 109.47805 * 182.42124 * 15 14 5 30 30 H 1.08996 * 109.48051 * 62.40081 * 15 14 5 31 31 H 1.09005 * 109.47798 * 58.82269 * 17 16 15 32 32 H 1.08999 * 109.48059 * 178.84469 * 17 16 15 33 33 H 1.08999 * 109.52127 * 177.51611 * 18 17 16 34 34 H 1.08998 * 109.52023 * 297.69522 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.6944 -1.8957 0.8921 6 6 3.8162 -1.6370 -0.0803 7 1 3.8438 -2.1606 -1.0246 8 6 4.8073 -0.7320 0.2353 9 7 5.7217 -0.4204 -0.6570 10 14 4.8513 0.0513 1.9306 11 1 5.7354 -0.7435 2.8204 12 1 5.3746 1.4368 1.8222 13 1 3.4789 0.0834 2.4968 14 6 1.7171 -2.9094 0.2891 15 6 0.6247 -3.2254 1.3142 16 8 1.2261 -3.7221 2.5116 17 6 2.1136 -2.7986 3.1453 18 6 3.2659 -2.4656 2.1939 19 1 -0.3634 -1.0256 -0.0637 20 1 -0.3634 0.4577 0.9201 21 1 -0.3634 0.5680 -0.8565 22 1 1.8932 -0.5138 -0.8900 23 1 3.1266 1.4437 -0.0850 24 1 1.6089 1.9803 -0.8445 25 1 1.7477 1.9312 0.9295 26 1 6.4192 0.2161 -0.4348 27 1 2.2525 -3.8239 0.0338 28 1 1.2635 -2.4890 -0.6085 29 1 -0.0495 -3.9786 0.9065 30 1 0.0634 -2.3184 1.5385 31 1 1.5719 -1.8858 3.3936 32 1 2.5118 -3.2443 4.0568 33 1 3.9201 -1.7278 2.6583 34 1 3.8326 -3.3712 1.9773 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260358078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:13 Heat of formation + Delta-G solvation = -92.771544 kcal Electronic energy + Delta-G solvation = -16174.609658 eV Core-core repulsion = 13686.836532 eV Total energy + Delta-G solvation = -2487.773126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.22770 -36.67967 -33.35696 -31.94963 -30.58272 -30.25311 -26.68104 -26.02713 -23.15820 -22.26672 -20.47964 -18.89420 -16.90171 -16.04451 -15.38250 -15.13508 -14.47652 -14.18780 -14.02507 -13.36100 -12.90539 -12.62358 -12.45513 -11.84496 -11.81662 -11.68150 -11.40443 -11.15638 -10.73461 -10.62869 -10.49601 -10.20286 -9.90671 -9.79870 -9.48737 -9.11586 -8.74823 -8.52357 -7.92005 -6.18582 -4.26552 3.30424 3.42941 3.61094 4.42959 4.46487 4.80658 5.19784 5.62503 5.72854 5.75538 5.80177 5.88699 5.92066 5.98613 6.03466 6.12452 6.21636 6.25611 6.34709 6.39224 6.50997 6.51336 6.68800 6.79163 6.90996 7.02939 7.06494 7.34541 7.57718 7.78195 8.17708 8.68092 8.84656 9.46790 10.92065 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026662 B = 0.017619 C = 0.013664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.936872 B = 1588.848445 C = 2048.755572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.091 3.909 3 C -0.153 4.153 4 O -0.386 6.386 5 C 0.206 3.794 6 C -0.545 4.545 7 H 0.074 0.926 8 C 0.091 3.909 9 N -0.888 5.888 10 Si 0.867 3.133 11 H -0.291 1.291 12 H -0.302 1.302 13 H -0.220 1.220 14 C -0.160 4.160 15 C 0.062 3.938 16 O -0.392 6.392 17 C 0.062 3.938 18 C -0.138 4.138 19 H 0.051 0.949 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.265 0.735 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 -0.570 3.594 9.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 C -0.210 4.210 4 O -0.307 6.307 5 C 0.168 3.832 6 C -0.582 4.582 7 H 0.093 0.907 8 C -0.114 4.114 9 N -0.525 5.525 10 Si 0.697 3.303 11 H -0.219 1.219 12 H -0.230 1.230 13 H -0.143 1.143 14 C -0.198 4.198 15 C -0.014 4.014 16 O -0.311 6.311 17 C -0.015 4.015 18 C -0.175 4.175 19 H 0.070 0.930 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.097 0.903 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.459 -0.587 3.804 9.294 hybrid contribution 0.481 0.684 0.362 0.912 sum -7.978 0.097 4.166 9.001 Atomic orbital electron populations 1.22275 0.97713 1.01174 1.00926 1.21582 0.90841 0.92715 0.91588 1.21998 1.02323 0.96573 1.00133 1.87927 1.74363 1.37404 1.30970 1.19394 0.89924 0.81681 0.92202 1.21262 1.07254 1.25560 1.04088 0.90749 1.24923 0.94434 0.95071 0.96949 1.69945 1.15067 1.33190 1.34251 0.87265 0.80270 0.77462 0.85315 1.21868 1.22968 1.14341 1.22624 0.97888 1.00945 0.98371 1.22574 0.94899 0.98475 0.85492 1.87786 1.61611 1.42185 1.39533 1.22572 0.91148 0.92821 0.94955 1.22449 0.97500 1.01105 0.96480 0.92985 0.93077 0.92878 0.90313 0.91870 0.93086 0.93540 0.92562 0.91329 0.91569 0.90496 0.93078 0.93038 0.90329 0.92049 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.31 37.16 0.35 -2.30 16 2 C 0.09 1.83 2.21 -26.73 -0.06 1.77 16 3 C -0.15 -2.99 9.21 37.16 0.34 -2.65 16 4 O -0.39 -8.56 5.72 -35.23 -0.20 -8.76 16 5 C 0.21 4.67 0.24 -91.59 -0.02 4.65 16 6 C -0.54 -14.53 7.06 -34.44 -0.24 -14.78 16 7 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 8 C 0.09 2.52 5.02 -17.82 -0.09 2.43 16 9 N -0.89 -26.29 13.96 55.43 0.77 -25.51 16 10 Si 0.87 21.63 22.28 -169.99 -3.79 17.85 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 13 H -0.22 -5.29 5.12 56.52 0.29 -5.00 16 14 C -0.16 -3.19 4.53 -26.59 -0.12 -3.31 16 15 C 0.06 1.10 6.48 37.21 0.24 1.34 16 16 O -0.39 -7.49 10.77 -35.23 -0.38 -7.87 16 17 C 0.06 1.16 6.69 37.21 0.25 1.41 16 18 C -0.14 -3.00 4.48 -26.60 -0.12 -3.12 16 19 H 0.05 0.80 6.23 -51.93 -0.32 0.48 16 20 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.08 1.74 5.92 -51.93 -0.31 1.44 16 23 H 0.06 1.42 6.36 -51.93 -0.33 1.09 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.07 1.27 6.43 -51.93 -0.33 0.94 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.90 6.63 -51.93 -0.34 0.55 16 31 H 0.05 0.98 7.82 -51.93 -0.41 0.57 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.40 3.25 -51.93 -0.17 1.23 16 34 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 251.34 15.07 3.79 3.79 Total: -1.00 -29.03 251.34 -4.54 -33.57 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.26 Total: 1.49 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 0.53 Total: -14.55 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 0.77 Total: -25.51 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.58 Total: -16.63 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -3.79 Total: 17.85 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.03 -4.54 -33.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.197 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds