Wall clock time and date at job start Mon Mar 30 2020 03:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46984 * 2 1 4 4 O 1.42894 * 109.47352 * 120.00401 * 2 1 3 5 5 C 1.42904 * 114.00476 * 113.67911 * 4 2 1 6 6 C 1.50698 * 109.61098 * 54.79017 * 5 4 2 7 7 H 1.08009 * 119.99630 * 238.43648 * 6 5 4 8 8 C 1.37876 * 120.00205 * 58.43946 * 6 5 4 9 9 N 1.31511 * 119.99890 * 185.83972 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 5.84399 * 8 6 5 11 11 H 1.48494 * 109.47207 * 93.31044 * 10 8 6 12 12 H 1.48502 * 109.46770 * 213.31116 * 10 8 6 13 13 H 1.48495 * 109.47183 * 333.30925 * 10 8 6 14 14 C 1.53181 * 109.53103 * 294.57937 * 5 4 2 15 15 C 1.53101 * 109.15973 * 297.09205 * 14 5 4 16 16 O 1.42901 * 109.42288 * 302.40972 * 15 14 5 17 17 C 1.42905 * 114.09865 * 61.15387 * 16 15 14 18 18 C 1.53092 * 109.41394 * 298.84258 * 17 16 15 19 19 H 1.08997 * 109.47439 * 176.44817 * 1 2 3 20 20 H 1.09005 * 109.47424 * 296.44764 * 1 2 3 21 21 H 1.09004 * 109.47284 * 56.44972 * 1 2 3 22 22 H 1.09000 * 109.46705 * 240.00304 * 2 1 3 23 23 H 1.09001 * 109.46875 * 184.74603 * 3 2 1 24 24 H 1.09000 * 109.47232 * 304.74061 * 3 2 1 25 25 H 1.09001 * 109.47021 * 64.74921 * 3 2 1 26 26 H 0.97005 * 120.00100 * 180.02562 * 9 8 6 27 27 H 1.09001 * 109.51105 * 177.19854 * 14 5 4 28 28 H 1.09001 * 109.53755 * 56.99898 * 14 5 4 29 29 H 1.09002 * 109.47805 * 182.42124 * 15 14 5 30 30 H 1.08996 * 109.48051 * 62.40081 * 15 14 5 31 31 H 1.09005 * 109.47798 * 58.82269 * 17 16 15 32 32 H 1.08999 * 109.48059 * 178.84469 * 17 16 15 33 33 H 1.08999 * 109.52127 * 177.51611 * 18 17 16 34 34 H 1.08998 * 109.52023 * 297.69522 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.6944 -1.8957 0.8921 6 6 3.8162 -1.6370 -0.0803 7 1 3.8438 -2.1606 -1.0246 8 6 4.8073 -0.7320 0.2353 9 7 5.7217 -0.4204 -0.6570 10 14 4.8513 0.0513 1.9306 11 1 5.7354 -0.7435 2.8204 12 1 5.3746 1.4368 1.8222 13 1 3.4789 0.0834 2.4968 14 6 1.7171 -2.9094 0.2891 15 6 0.6247 -3.2254 1.3142 16 8 1.2261 -3.7221 2.5116 17 6 2.1136 -2.7986 3.1453 18 6 3.2659 -2.4656 2.1939 19 1 -0.3634 -1.0256 -0.0637 20 1 -0.3634 0.4577 0.9201 21 1 -0.3634 0.5680 -0.8565 22 1 1.8932 -0.5138 -0.8900 23 1 3.1266 1.4437 -0.0850 24 1 1.6089 1.9803 -0.8445 25 1 1.7477 1.9312 0.9295 26 1 6.4192 0.2161 -0.4348 27 1 2.2525 -3.8239 0.0338 28 1 1.2635 -2.4890 -0.6085 29 1 -0.0495 -3.9786 0.9065 30 1 0.0634 -2.3184 1.5385 31 1 1.5719 -1.8858 3.3936 32 1 2.5118 -3.2443 4.0568 33 1 3.9201 -1.7278 2.6583 34 1 3.8326 -3.3712 1.9773 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260358078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:13 Heat of formation + Delta-G solvation = -112.987747 kcal Electronic energy + Delta-G solvation = -16175.486299 eV Core-core repulsion = 13686.836532 eV Total energy + Delta-G solvation = -2488.649766 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.86019 -38.25582 -35.15302 -33.89033 -32.13895 -31.86687 -28.36420 -27.70408 -24.72342 -24.00903 -22.06852 -20.59597 -18.89419 -17.69048 -17.01098 -16.80654 -16.11378 -15.83707 -15.64498 -15.12331 -14.62525 -14.46440 -14.00688 -13.54866 -13.39153 -13.09275 -12.90154 -12.74848 -12.53865 -12.39069 -12.21599 -12.02145 -11.63685 -11.40889 -11.07318 -10.89862 -10.74443 -10.31337 -9.66851 -8.36522 -6.45741 1.29146 1.38339 1.59906 2.35329 2.93826 3.04264 3.29249 4.08903 4.19416 4.22051 4.27905 4.38575 4.41299 4.48209 4.54696 4.64550 4.74967 4.80664 4.84369 4.95998 5.01246 5.03929 5.13423 5.19538 5.31528 5.42781 5.50290 5.60302 5.67925 6.07128 6.32874 6.61858 6.90754 7.31387 8.78128 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026662 B = 0.017619 C = 0.013664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.936872 B = 1588.848445 C = 2048.755572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.084 3.916 3 C -0.152 4.152 4 O -0.391 6.391 5 C 0.205 3.795 6 C -0.538 4.538 7 H 0.034 0.966 8 C 0.047 3.953 9 N -0.935 5.935 10 Si 0.918 3.082 11 H -0.288 1.288 12 H -0.311 1.311 13 H -0.201 1.201 14 C -0.157 4.157 15 C 0.067 3.933 16 O -0.396 6.396 17 C 0.068 3.932 18 C -0.144 4.144 19 H 0.059 0.941 20 H 0.061 0.939 21 H 0.075 0.925 22 H 0.050 0.950 23 H 0.025 0.975 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.264 0.736 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.925 -0.575 5.163 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.026 3.974 3 C -0.209 4.209 4 O -0.311 6.311 5 C 0.167 3.833 6 C -0.575 4.575 7 H 0.053 0.947 8 C -0.153 4.153 9 N -0.575 5.575 10 Si 0.746 3.254 11 H -0.216 1.216 12 H -0.240 1.240 13 H -0.124 1.124 14 C -0.195 4.195 15 C -0.010 4.010 16 O -0.315 6.315 17 C -0.008 4.008 18 C -0.182 4.182 19 H 0.078 0.922 20 H 0.080 0.920 21 H 0.094 0.906 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.875 -0.607 5.378 12.147 hybrid contribution 1.218 0.668 -0.252 1.411 sum -9.657 0.061 5.126 10.934 Atomic orbital electron populations 1.22159 0.93985 1.02341 1.02516 1.21768 0.93697 0.92294 0.89640 1.22003 0.99996 0.96883 1.02054 1.87863 1.74269 1.37223 1.31791 1.19321 0.89304 0.82757 0.91967 1.21505 1.08435 1.24189 1.03415 0.94738 1.25552 0.94204 0.95765 0.99752 1.70065 1.16398 1.34764 1.36234 0.86485 0.81035 0.76001 0.81865 1.21590 1.23975 1.12364 1.22548 0.98117 0.99531 0.99300 1.22662 0.94064 0.99956 0.84289 1.87798 1.61457 1.42436 1.39827 1.22573 0.89892 0.93410 0.94947 1.22451 0.98629 1.00397 0.96692 0.92189 0.92017 0.90648 0.93233 0.95568 0.90404 0.92208 0.92703 0.92432 0.91294 0.87414 0.92282 0.92662 0.87499 0.93110 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.31 71.98 0.67 -3.74 16 2 C 0.08 3.24 2.21 30.59 0.07 3.30 16 3 C -0.15 -5.72 9.21 71.98 0.66 -5.06 16 4 O -0.39 -16.59 5.72 -148.98 -0.85 -17.44 16 5 C 0.20 9.12 0.24 -11.42 0.00 9.12 16 6 C -0.54 -29.47 7.06 25.60 0.18 -29.28 16 7 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 8 C 0.05 2.69 5.02 84.65 0.42 3.11 16 9 N -0.94 -57.51 13.96 21.45 0.30 -57.21 16 10 Si 0.92 45.06 22.28 68.60 1.53 46.59 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 13 H -0.20 -9.19 5.12 99.48 0.51 -8.68 16 14 C -0.16 -6.03 4.53 30.69 0.14 -5.89 16 15 C 0.07 2.12 6.48 72.02 0.47 2.59 16 16 O -0.40 -13.72 10.77 -148.98 -1.60 -15.33 16 17 C 0.07 2.35 6.69 72.01 0.48 2.83 16 18 C -0.14 -6.04 4.48 30.68 0.14 -5.90 16 19 H 0.06 1.63 6.23 -2.39 -0.01 1.62 16 20 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 21 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 22 H 0.05 2.20 5.92 -2.39 -0.01 2.18 16 23 H 0.03 1.15 6.36 -2.39 -0.02 1.14 16 24 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.07 2.57 6.43 -2.39 -0.02 2.56 16 29 H 0.11 2.80 8.14 -2.39 -0.02 2.79 16 30 H 0.06 1.82 6.63 -2.39 -0.02 1.80 16 31 H 0.06 1.88 7.82 -2.38 -0.02 1.86 16 32 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.05 2.22 3.25 -2.39 -0.01 2.22 16 34 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -63.33 251.34 3.47 -59.86 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.87 Total: 12.44 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 3.23 Total: -28.91 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.30 Total: -57.21 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -2.46 Total: -32.76 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.53 Total: 46.59 kcal Total: -63.33 3.47 -59.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.132 kcal (2) G-P(sol) polarization free energy of solvation -63.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds