Wall clock time and date at job start Mon Mar 30 2020 03:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46930 * 2 1 4 4 C 1.52999 * 109.47238 * 240.00014 * 2 1 3 5 5 O 1.42902 * 109.47369 * 119.99715 * 2 1 3 6 6 C 1.42897 * 113.99643 * 66.40500 * 5 2 1 7 7 C 1.50693 * 110.45963 * 306.19381 * 6 5 2 8 8 H 1.08003 * 119.99944 * 114.24071 * 7 6 5 9 9 C 1.37875 * 120.00251 * 294.23341 * 7 6 5 10 10 N 1.31511 * 119.99941 * 4.35494 * 9 7 6 11 11 Si 1.86807 * 120.00164 * 184.35481 * 9 7 6 12 12 H 1.48504 * 109.46898 * 269.99986 * 11 9 7 13 13 H 1.48493 * 109.46838 * 30.00112 * 11 9 7 14 14 H 1.48500 * 109.47051 * 150.00488 * 11 9 7 15 15 C 1.54509 * 110.51321 * 68.80291 * 6 5 2 16 16 C 1.54476 * 104.06702 * 118.77707 * 15 6 5 17 17 O 1.44432 * 104.80094 * 336.02297 * 16 15 6 18 18 C 1.44643 * 105.36882 * 40.43420 * 17 16 15 19 19 H 1.09004 * 109.47111 * 278.71152 * 1 2 3 20 20 H 1.08997 * 109.47553 * 38.71135 * 1 2 3 21 21 H 1.09007 * 109.47058 * 158.71567 * 1 2 3 22 22 H 1.09002 * 109.47101 * 180.02562 * 3 2 1 23 23 H 1.09001 * 109.47068 * 300.00046 * 3 2 1 24 24 H 1.08995 * 109.47358 * 59.99881 * 3 2 1 25 25 H 1.09001 * 109.46940 * 301.45531 * 4 2 1 26 26 H 1.08999 * 109.47179 * 61.46033 * 4 2 1 27 27 H 1.09002 * 109.47470 * 181.46204 * 4 2 1 28 28 H 0.97004 * 119.99904 * 354.85010 * 10 9 7 29 29 H 1.08993 * 110.51329 * 237.42494 * 15 6 5 30 30 H 1.09007 * 110.50788 * 359.97438 * 15 6 5 31 31 H 1.09002 * 110.37160 * 94.85287 * 16 15 6 32 32 H 1.09002 * 110.37445 * 217.19207 * 16 15 6 33 33 H 1.09001 * 110.50733 * 200.81381 * 18 17 16 34 34 H 1.09005 * 110.33955 * 78.40583 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0064 -0.6736 1.1668 6 6 1.7075 -2.0707 1.1941 7 6 0.2310 -2.2974 0.9955 8 1 -0.1236 -2.7999 0.1077 9 6 -0.6673 -1.8635 1.9472 10 7 -0.2443 -1.1768 2.9860 11 14 -2.4852 -2.2510 1.7613 12 1 -3.1478 -1.1628 0.9984 13 1 -2.6456 -3.5350 1.0328 14 1 -3.1074 -2.3632 3.1050 15 6 2.5202 -2.8194 0.1142 16 6 3.3858 -3.8145 0.9184 17 8 3.4907 -3.2314 2.2357 18 6 2.1774 -2.6988 2.5249 19 1 -0.3633 0.1557 1.0158 20 1 -0.3634 0.8018 -0.6427 21 1 -0.3633 -0.9576 -0.3731 22 1 3.1300 1.4426 -0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.6555 -1.7411 -1.2623 26 1 1.6982 -0.1925 -2.1390 27 1 3.1297 -0.7440 -1.2362 28 1 0.7063 -1.0395 3.1221 29 1 1.8541 -3.3535 -0.5633 30 1 3.1497 -2.1237 -0.4408 31 1 2.8958 -4.7867 0.9718 32 1 4.3729 -3.9105 0.4662 33 1 2.2367 -1.9383 3.3034 34 1 1.5018 -3.4995 2.8260 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260358124.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:52 Heat of formation + Delta-G solvation = -89.646893 kcal Electronic energy + Delta-G solvation = -16301.900727 eV Core-core repulsion = 13814.263096 eV Total energy + Delta-G solvation = -2487.637631 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.14295 -38.58533 -35.12045 -33.70943 -32.33836 -29.26301 -28.28214 -28.10355 -26.11329 -23.31921 -21.93008 -20.81069 -19.12688 -17.27928 -16.73952 -16.47314 -15.89685 -15.73386 -15.40457 -15.06564 -14.63155 -13.98585 -13.82970 -13.39350 -13.20541 -13.01252 -12.78363 -12.54707 -12.41979 -12.10573 -12.05412 -11.95036 -11.64520 -11.17651 -11.07690 -10.91943 -10.44972 -10.24310 -9.79884 -8.44874 -6.17864 1.54663 1.60193 1.75922 2.55916 3.06839 3.19181 3.38587 4.04167 4.10724 4.21827 4.31996 4.37004 4.48250 4.55121 4.68065 4.77188 4.83773 4.85609 4.88702 4.96722 5.06819 5.12563 5.20935 5.26689 5.28731 5.43692 5.65688 5.78881 6.02061 6.06162 6.25202 6.67479 7.05549 7.56334 8.89269 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.017633 C = 0.012699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.219609 B = 1587.513882 C = 2204.366529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.116 3.884 3 C -0.131 4.131 4 C -0.173 4.173 5 O -0.407 6.407 6 C 0.190 3.810 7 C -0.609 4.609 8 H 0.052 0.948 9 C 0.003 3.997 10 N -0.919 5.919 11 Si 1.090 2.910 12 H -0.275 1.275 13 H -0.271 1.271 14 H -0.290 1.290 15 C -0.177 4.177 16 C 0.041 3.959 17 O -0.407 6.407 18 C 0.072 3.928 19 H 0.043 0.957 20 H 0.033 0.967 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.272 0.728 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 -0.648 -7.934 8.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.077 3.923 3 C -0.188 4.188 4 C -0.230 4.230 5 O -0.328 6.328 6 C 0.152 3.848 7 C -0.646 4.646 8 H 0.071 0.929 9 C -0.200 4.200 10 N -0.557 5.557 11 Si 0.914 3.086 12 H -0.201 1.201 13 H -0.195 1.195 14 H -0.216 1.216 15 C -0.214 4.214 16 C -0.035 4.035 17 O -0.327 6.327 18 C -0.005 4.005 19 H 0.062 0.938 20 H 0.052 0.948 21 H 0.091 0.909 22 H 0.077 0.923 23 H 0.103 0.897 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.594 -0.294 -6.977 7.163 hybrid contribution 1.045 -0.343 -0.513 1.213 sum 2.638 -0.637 -7.490 7.967 Atomic orbital electron populations 1.22668 0.96316 1.00989 1.01251 1.21210 0.93548 0.92061 0.85500 1.21774 1.01051 0.94111 1.01871 1.22913 1.00314 1.02181 0.97550 1.87793 1.78956 1.23039 1.42972 1.20470 0.93863 0.79579 0.90879 1.22246 0.91454 1.42829 1.08089 0.92948 1.26630 1.08463 0.92149 0.92791 1.70768 1.18728 1.35715 1.30498 0.83301 0.71912 0.77150 0.76200 1.20055 1.19543 1.21585 1.24136 0.99020 0.99063 0.99179 1.23569 1.01174 0.96030 0.82733 1.89002 1.31605 1.76904 1.35151 1.23413 0.82752 0.95881 0.98408 0.93807 0.94770 0.90888 0.92308 0.89653 0.94101 0.91117 0.91429 0.92259 0.91569 0.90483 0.88820 0.92421 0.87514 0.91917 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.81 6.99 71.98 0.50 -6.31 16 2 C 0.12 4.77 1.11 -10.79 -0.01 4.76 16 3 C -0.13 -4.58 8.74 71.98 0.63 -3.95 16 4 C -0.17 -5.95 6.72 71.98 0.48 -5.47 16 5 O -0.41 -19.97 8.86 -148.98 -1.32 -21.29 16 6 C 0.19 9.05 0.52 -10.52 -0.01 9.04 16 7 C -0.61 -30.51 4.13 25.60 0.11 -30.40 16 8 H 0.05 2.60 7.04 -2.91 -0.02 2.58 16 9 C 0.00 0.14 2.98 84.65 0.25 0.39 16 10 N -0.92 -52.69 12.71 21.45 0.27 -52.42 16 11 Si 1.09 47.47 29.86 68.60 2.05 49.52 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 14 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 15 C -0.18 -6.94 4.30 31.61 0.14 -6.80 16 16 C 0.04 1.51 7.64 72.48 0.55 2.07 16 17 O -0.41 -18.36 11.65 -148.98 -1.74 -20.10 16 18 C 0.07 3.56 5.70 72.49 0.41 3.98 16 19 H 0.04 2.23 5.75 -2.39 -0.01 2.22 16 20 H 0.03 1.29 7.95 -2.39 -0.02 1.27 16 21 H 0.07 3.31 5.18 -2.38 -0.01 3.30 16 22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.08 2.45 8.13 -2.39 -0.02 2.43 16 24 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 2.58 4.45 -2.39 -0.01 2.57 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.06 1.91 6.79 -2.39 -0.02 1.89 16 28 H 0.27 16.02 4.69 -92.71 -0.44 15.58 16 29 H 0.08 2.91 6.75 -2.39 -0.02 2.90 16 30 H 0.09 3.44 4.58 -2.38 -0.01 3.43 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.06 3.33 6.69 -2.39 -0.02 3.31 16 34 H 0.05 2.64 7.85 -2.38 -0.02 2.62 16 Total: -1.00 -59.22 249.76 3.74 -55.48 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 1.41 Total: 21.50 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 3.06 Total: -32.70 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.27 Total: -52.42 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -3.06 Total: -41.39 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.05 Total: 49.52 kcal Total: -59.22 3.74 -55.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358124.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.164 kcal (2) G-P(sol) polarization free energy of solvation -59.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds