Wall clock time and date at job start Mon Mar 30 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46957 * 2 1 4 4 C 1.53002 * 109.47286 * 240.00125 * 2 1 3 5 5 O 1.42900 * 109.47578 * 119.99420 * 2 1 3 6 6 C 1.42900 * 113.99312 * 61.56077 * 5 2 1 7 7 C 1.50696 * 110.46412 * 55.89456 * 6 5 2 8 8 H 1.07994 * 120.00536 * 246.24936 * 7 6 5 9 9 C 1.37882 * 119.99752 * 66.24260 * 7 6 5 10 10 N 1.31515 * 120.00147 * 184.19472 * 9 7 6 11 11 Si 1.86802 * 119.99859 * 4.19225 * 9 7 6 12 12 H 1.48503 * 109.47085 * 85.21525 * 11 9 7 13 13 H 1.48502 * 109.47056 * 205.21150 * 11 9 7 14 14 H 1.48496 * 109.47509 * 325.21380 * 11 9 7 15 15 C 1.54517 * 110.62969 * 293.20888 * 6 5 2 16 16 C 1.54474 * 104.06260 * 241.30429 * 15 6 5 17 17 O 1.44426 * 104.80716 * 23.97593 * 16 15 6 18 18 C 1.44425 * 105.27587 * 319.48825 * 17 16 15 19 19 H 1.09001 * 109.46679 * 298.09153 * 1 2 3 20 20 H 1.08994 * 109.47095 * 58.09738 * 1 2 3 21 21 H 1.09002 * 109.46948 * 178.09738 * 1 2 3 22 22 H 1.08998 * 109.47055 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.46627 * 299.99722 * 3 2 1 24 24 H 1.08999 * 109.47116 * 59.99952 * 3 2 1 25 25 H 1.08995 * 109.46873 * 316.71012 * 4 2 1 26 26 H 1.08996 * 109.47329 * 76.70778 * 4 2 1 27 27 H 1.09006 * 109.47030 * 196.71567 * 4 2 1 28 28 H 0.97000 * 120.00227 * 180.02562 * 10 9 7 29 29 H 1.09004 * 110.50697 * 359.94631 * 15 6 5 30 30 H 1.08993 * 110.51127 * 122.52118 * 15 6 5 31 31 H 1.09004 * 110.37300 * 265.14393 * 16 15 6 32 32 H 1.08999 * 110.37315 * 142.81036 * 16 15 6 33 33 H 1.08996 * 110.37370 * 159.34297 * 18 17 16 34 34 H 1.08997 * 110.36982 * 281.68250 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6735 1.1668 6 6 1.6140 -2.0452 1.2469 7 6 2.0528 -2.7916 0.0135 8 1 1.3155 -3.1850 -0.6706 9 6 3.3957 -2.9723 -0.2417 10 7 3.7809 -3.5506 -1.3583 11 14 4.6679 -2.3954 0.9985 12 1 4.8716 -3.4488 2.0252 13 1 5.9521 -2.1279 0.3023 14 1 4.1916 -1.1509 1.6540 15 6 0.0851 -2.1639 1.4362 16 6 -0.0703 -2.8793 2.7964 17 8 1.1554 -2.5947 3.5053 18 6 2.2014 -2.7030 2.5153 19 1 -0.3633 0.4839 0.9066 20 1 -0.3633 0.5431 -0.8724 21 1 -0.3633 -1.0271 -0.0341 22 1 3.1300 1.4426 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.4559 -1.6274 -1.4095 26 1 1.9384 -0.0658 -2.1142 27 1 3.0892 -0.9844 -1.1140 28 1 4.7256 -3.6780 -1.5376 29 1 -0.3734 -1.1756 1.4698 30 1 -0.3536 -2.7604 0.6363 31 1 -0.1831 -3.9535 2.6496 32 1 -0.9253 -2.4781 3.3407 33 1 3.0916 -2.1665 2.8435 34 1 2.4370 -3.7502 2.3253 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260358133.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:54 Heat of formation + Delta-G solvation = -53.543671 kcal Electronic energy + Delta-G solvation = -16322.015306 eV Core-core repulsion = 13835.943229 eV Total energy + Delta-G solvation = -2486.072078 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.51096 -36.98601 -33.01977 -32.23691 -30.69334 -28.48223 -26.73628 -26.55966 -24.00734 -22.06642 -20.11328 -19.00430 -17.01919 -15.84932 -15.21596 -14.86169 -14.49727 -14.02302 -13.77809 -13.26678 -12.91594 -12.46380 -12.27538 -12.00552 -11.57206 -11.49290 -11.17458 -10.90328 -10.74134 -10.49118 -10.43602 -10.06176 -9.86457 -9.73402 -9.33302 -9.01475 -8.84800 -8.32803 -8.20898 -6.23134 -4.16994 3.26143 3.38077 3.54782 4.37308 4.65411 4.80878 5.15914 5.58480 5.63638 5.71655 5.80817 5.86616 6.00870 6.12622 6.20951 6.24970 6.31954 6.34955 6.49051 6.56282 6.58834 6.63991 6.76874 6.79376 6.89559 7.13423 7.29730 7.38876 7.67631 7.92077 8.15531 8.67235 8.72456 9.38924 10.86699 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.022961 B = 0.020721 C = 0.014456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.153788 B = 1350.950940 C = 1936.493529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.121 3.879 3 C -0.136 4.136 4 C -0.151 4.151 5 O -0.381 6.381 6 C 0.183 3.817 7 C -0.532 4.532 8 H 0.082 0.918 9 C 0.088 3.912 10 N -0.882 5.882 11 Si 0.855 3.145 12 H -0.280 1.280 13 H -0.294 1.294 14 H -0.231 1.231 15 C -0.187 4.187 16 C 0.046 3.954 17 O -0.387 6.387 18 C 0.045 3.955 19 H 0.049 0.951 20 H 0.046 0.954 21 H 0.084 0.916 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.097 0.903 26 H 0.010 0.990 27 H 0.065 0.935 28 H 0.266 0.734 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.073 4.790 3.126 7.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.082 3.918 3 C -0.193 4.193 4 C -0.207 4.207 5 O -0.301 6.301 6 C 0.144 3.856 7 C -0.568 4.568 8 H 0.100 0.900 9 C -0.117 4.117 10 N -0.519 5.519 11 Si 0.682 3.318 12 H -0.206 1.206 13 H -0.221 1.221 14 H -0.155 1.155 15 C -0.224 4.224 16 C -0.031 4.031 17 O -0.306 6.306 18 C -0.031 4.031 19 H 0.068 0.932 20 H 0.065 0.935 21 H 0.102 0.898 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.115 0.885 26 H 0.029 0.971 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.787 4.877 3.385 7.626 hybrid contribution 0.679 0.001 0.076 0.683 sum -4.109 4.878 3.462 7.256 Atomic orbital electron populations 1.23065 0.97914 1.03297 1.00040 1.21071 0.91642 0.91274 0.87857 1.21788 1.01435 0.95346 1.00756 1.22903 1.04083 1.00292 0.93466 1.87903 1.75463 1.24693 1.42079 1.20633 0.89496 0.81014 0.94450 1.21062 0.93298 1.36011 1.06479 0.90022 1.24826 0.98352 0.93627 0.94889 1.69900 1.16588 1.41737 1.23638 0.87405 0.80689 0.81712 0.82000 1.20632 1.22133 1.15467 1.24226 0.99853 1.01718 0.96600 1.23336 0.87856 0.98782 0.93143 1.89000 1.16390 1.91802 1.33455 1.23973 0.90966 1.00186 0.87958 0.93199 0.93531 0.89780 0.92650 0.92311 0.93101 0.88505 0.97097 0.91621 0.92382 0.89108 0.90471 0.93112 0.90565 0.90064 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 6.82 37.16 0.25 -3.03 16 2 C 0.12 2.47 1.13 -90.61 -0.10 2.37 16 3 C -0.14 -2.40 8.78 37.16 0.33 -2.07 16 4 C -0.15 -3.36 6.94 37.16 0.26 -3.10 16 5 O -0.38 -8.88 7.71 -35.23 -0.27 -9.15 16 6 C 0.18 4.20 0.56 -90.20 -0.05 4.15 16 7 C -0.53 -13.55 4.90 -34.44 -0.17 -13.72 16 8 H 0.08 2.23 6.86 -52.49 -0.36 1.87 16 9 C 0.09 2.35 3.42 -17.82 -0.06 2.29 16 10 N -0.88 -24.98 13.96 55.43 0.77 -24.21 16 11 Si 0.85 21.09 23.12 -169.99 -3.93 17.16 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 14 H -0.23 -5.70 5.35 56.52 0.30 -5.40 16 15 C -0.19 -3.65 4.33 -25.16 -0.11 -3.76 16 16 C 0.05 0.84 7.63 37.93 0.29 1.13 16 17 O -0.39 -8.40 11.65 -35.23 -0.41 -8.81 16 18 C 0.05 1.04 4.90 37.94 0.19 1.23 16 19 H 0.05 0.83 7.43 -51.93 -0.39 0.44 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.08 1.52 4.52 -51.93 -0.23 1.29 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.10 2.33 4.99 -51.93 -0.26 2.08 16 26 H 0.01 0.21 8.03 -51.93 -0.42 -0.21 16 27 H 0.06 1.64 5.33 -51.93 -0.28 1.36 16 28 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.09 1.67 4.39 -51.93 -0.23 1.44 16 30 H 0.08 1.48 7.08 -51.93 -0.37 1.11 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.91 5.19 -51.93 -0.27 1.64 16 34 H 0.07 1.71 7.45 -51.93 -0.39 1.32 16 LS Contribution 243.85 15.07 3.67 3.67 Total: -1.00 -28.05 243.85 -4.30 -32.35 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -4.96 Total: 3.51 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 0.82 Total: -14.52 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.77 Total: -24.21 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.68 Total: -17.96 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -3.93 Total: 17.16 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.05 -4.30 -32.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358133.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.198 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds