Wall clock time and date at job start Mon Mar 30 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46957 * 2 1 4 4 C 1.53002 * 109.47286 * 240.00125 * 2 1 3 5 5 O 1.42900 * 109.47578 * 119.99420 * 2 1 3 6 6 C 1.42900 * 113.99312 * 61.56077 * 5 2 1 7 7 C 1.50696 * 110.46412 * 55.89456 * 6 5 2 8 8 H 1.07994 * 120.00536 * 246.24936 * 7 6 5 9 9 C 1.37882 * 119.99752 * 66.24260 * 7 6 5 10 10 N 1.31515 * 120.00147 * 184.19472 * 9 7 6 11 11 Si 1.86802 * 119.99859 * 4.19225 * 9 7 6 12 12 H 1.48503 * 109.47085 * 85.21525 * 11 9 7 13 13 H 1.48502 * 109.47056 * 205.21150 * 11 9 7 14 14 H 1.48496 * 109.47509 * 325.21380 * 11 9 7 15 15 C 1.54517 * 110.62969 * 293.20888 * 6 5 2 16 16 C 1.54474 * 104.06260 * 241.30429 * 15 6 5 17 17 O 1.44426 * 104.80716 * 23.97593 * 16 15 6 18 18 C 1.44425 * 105.27587 * 319.48825 * 17 16 15 19 19 H 1.09001 * 109.46679 * 298.09153 * 1 2 3 20 20 H 1.08994 * 109.47095 * 58.09738 * 1 2 3 21 21 H 1.09002 * 109.46948 * 178.09738 * 1 2 3 22 22 H 1.08998 * 109.47055 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.46627 * 299.99722 * 3 2 1 24 24 H 1.08999 * 109.47116 * 59.99952 * 3 2 1 25 25 H 1.08995 * 109.46873 * 316.71012 * 4 2 1 26 26 H 1.08996 * 109.47329 * 76.70778 * 4 2 1 27 27 H 1.09006 * 109.47030 * 196.71567 * 4 2 1 28 28 H 0.97000 * 120.00227 * 180.02562 * 10 9 7 29 29 H 1.09004 * 110.50697 * 359.94631 * 15 6 5 30 30 H 1.08993 * 110.51127 * 122.52118 * 15 6 5 31 31 H 1.09004 * 110.37300 * 265.14393 * 16 15 6 32 32 H 1.08999 * 110.37315 * 142.81036 * 16 15 6 33 33 H 1.08996 * 110.37370 * 159.34297 * 18 17 16 34 34 H 1.08997 * 110.36982 * 281.68250 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6735 1.1668 6 6 1.6140 -2.0452 1.2469 7 6 2.0528 -2.7916 0.0135 8 1 1.3155 -3.1850 -0.6706 9 6 3.3957 -2.9723 -0.2417 10 7 3.7809 -3.5506 -1.3583 11 14 4.6679 -2.3954 0.9985 12 1 4.8716 -3.4488 2.0252 13 1 5.9521 -2.1279 0.3023 14 1 4.1916 -1.1509 1.6540 15 6 0.0851 -2.1639 1.4362 16 6 -0.0703 -2.8793 2.7964 17 8 1.1554 -2.5947 3.5053 18 6 2.2014 -2.7030 2.5153 19 1 -0.3633 0.4839 0.9066 20 1 -0.3633 0.5431 -0.8724 21 1 -0.3633 -1.0271 -0.0341 22 1 3.1300 1.4426 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9564 0.8900 25 1 1.4559 -1.6274 -1.4095 26 1 1.9384 -0.0658 -2.1142 27 1 3.0892 -0.9844 -1.1140 28 1 4.7256 -3.6780 -1.5376 29 1 -0.3734 -1.1756 1.4698 30 1 -0.3536 -2.7604 0.6363 31 1 -0.1831 -3.9535 2.6496 32 1 -0.9253 -2.4781 3.3407 33 1 3.0916 -2.1665 2.8435 34 1 2.4370 -3.7502 2.3253 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260358133.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:54 Heat of formation + Delta-G solvation = -73.307814 kcal Electronic energy + Delta-G solvation = -16322.872344 eV Core-core repulsion = 13835.943229 eV Total energy + Delta-G solvation = -2486.929115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.20873 -38.63297 -34.94087 -33.98181 -32.33943 -30.28271 -28.31479 -28.08738 -25.91590 -23.67025 -21.80163 -20.74147 -18.91001 -17.59771 -16.95814 -16.50771 -16.16244 -15.74489 -15.56042 -14.94375 -14.76964 -14.11428 -13.90092 -13.58323 -13.20678 -12.96448 -12.94254 -12.59051 -12.45591 -12.28584 -12.24641 -11.84446 -11.56142 -11.37162 -10.99793 -10.85473 -10.52214 -10.33823 -9.96897 -8.32507 -6.24896 1.27191 1.36028 1.54646 2.34101 2.89398 3.10834 3.28640 4.00032 4.12390 4.24255 4.33293 4.38751 4.42582 4.50093 4.65644 4.73570 4.83001 4.88071 4.90507 4.97897 5.06645 5.15254 5.18478 5.28447 5.31004 5.45519 5.47587 5.67021 5.92470 6.06682 6.13639 6.63209 6.91983 7.32771 8.80590 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.022961 B = 0.020721 C = 0.014456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.153788 B = 1350.950940 C = 1936.493529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.108 3.892 3 C -0.133 4.133 4 C -0.142 4.142 5 O -0.397 6.397 6 C 0.176 3.824 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.052 3.948 10 N -0.922 5.922 11 Si 0.894 3.106 12 H -0.274 1.274 13 H -0.302 1.302 14 H -0.230 1.230 15 C -0.181 4.181 16 C 0.042 3.958 17 O -0.395 6.395 18 C 0.045 3.955 19 H 0.065 0.935 20 H 0.068 0.932 21 H 0.076 0.924 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.264 0.736 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 6.188 4.130 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.069 3.931 3 C -0.190 4.190 4 C -0.199 4.199 5 O -0.317 6.317 6 C 0.137 3.863 7 C -0.549 4.549 8 H 0.074 0.926 9 C -0.148 4.148 10 N -0.561 5.561 11 Si 0.721 3.279 12 H -0.200 1.200 13 H -0.229 1.229 14 H -0.153 1.153 15 C -0.218 4.218 16 C -0.034 4.034 17 O -0.314 6.314 18 C -0.031 4.031 19 H 0.084 0.916 20 H 0.087 0.913 21 H 0.094 0.906 22 H 0.061 0.939 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.126 0.874 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.131 0.869 33 H 0.092 0.908 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.312 6.279 4.405 9.933 hybrid contribution 1.070 -0.414 -0.289 1.183 sum -5.242 5.864 4.116 8.878 Atomic orbital electron populations 1.22955 0.95394 1.03452 1.01935 1.21386 0.93774 0.92158 0.85749 1.21789 1.00721 0.93659 1.02807 1.22710 1.01543 0.99987 0.95683 1.87865 1.76321 1.24354 1.43206 1.20637 0.91908 0.80782 0.92968 1.21147 0.92347 1.34726 1.06635 0.92597 1.25272 0.99808 0.94063 0.95702 1.69989 1.16610 1.44204 1.25308 0.86792 0.78927 0.81535 0.80661 1.20016 1.22943 1.15284 1.24177 0.97217 1.03012 0.97437 1.23602 0.87645 0.99581 0.92604 1.88987 1.17117 1.91914 1.33410 1.23817 0.91418 0.99505 0.88397 0.91584 0.91314 0.90572 0.93891 0.89669 0.91653 0.90957 0.95103 0.94861 0.92656 0.87357 0.90485 0.92247 0.86901 0.90836 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.74 6.82 71.98 0.49 -5.25 16 2 C 0.11 4.19 1.13 -10.79 -0.01 4.17 16 3 C -0.13 -4.28 8.78 71.99 0.63 -3.65 16 4 C -0.14 -6.25 6.94 71.98 0.50 -5.75 16 5 O -0.40 -17.83 7.71 -148.98 -1.15 -18.98 16 6 C 0.18 7.88 0.56 -10.52 -0.01 7.88 16 7 C -0.51 -26.28 4.90 25.60 0.13 -26.15 16 8 H 0.06 3.13 6.86 -2.91 -0.02 3.11 16 9 C 0.05 2.83 3.42 84.66 0.29 3.12 16 10 N -0.92 -53.66 13.96 21.45 0.30 -53.36 16 11 Si 0.89 43.93 23.12 68.60 1.59 45.51 16 12 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 13 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 14 H -0.23 -11.14 5.35 99.48 0.53 -10.61 16 15 C -0.18 -6.66 4.33 31.61 0.14 -6.52 16 16 C 0.04 1.40 7.63 72.48 0.55 1.96 16 17 O -0.39 -16.20 11.65 -148.98 -1.74 -17.93 16 18 C 0.05 2.03 4.90 72.49 0.36 2.39 16 19 H 0.07 1.90 7.43 -2.39 -0.02 1.88 16 20 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 21 H 0.08 2.55 4.52 -2.39 -0.01 2.54 16 22 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.07 3.51 4.99 -2.39 -0.01 3.49 16 26 H 0.03 1.19 8.03 -2.39 -0.02 1.17 16 27 H 0.03 1.66 5.33 -2.38 -0.01 1.64 16 28 H 0.26 14.82 8.31 -92.71 -0.77 14.04 16 29 H 0.11 3.60 4.39 -2.38 -0.01 3.59 16 30 H 0.08 2.82 7.08 -2.39 -0.02 2.80 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.07 3.39 5.19 -2.39 -0.01 3.38 16 34 H 0.06 2.96 7.45 -2.39 -0.02 2.94 16 Total: -1.00 -59.93 243.85 2.98 -56.96 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.91 Total: 15.62 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 3.06 Total: -27.81 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.30 Total: -53.36 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -2.88 Total: -36.91 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.59 Total: 45.51 kcal Total: -59.93 2.98 -56.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358133.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.349 kcal (2) G-P(sol) polarization free energy of solvation -59.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds