Wall clock time and date at job start Mon Mar 30 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47382 * 2 1 4 4 C 1.53001 * 109.46701 * 120.00254 * 2 1 3 5 5 C 1.52994 * 109.47360 * 65.65457 * 4 2 1 6 6 C 1.53002 * 113.00182 * 43.63773 * 5 4 2 7 7 O 1.42899 * 109.47484 * 174.74148 * 6 5 4 8 8 C 1.34921 * 117.00041 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00303 * 359.97438 * 8 7 6 10 10 C 1.38638 * 120.00136 * 179.97438 * 8 7 6 11 11 N 1.31590 * 120.00013 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00110 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47044 * 60.00174 * 12 10 8 14 14 H 1.48508 * 109.47008 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47502 * 299.99879 * 12 10 8 16 16 C 1.54035 * 113.81979 * 271.64917 * 5 4 2 17 17 O 1.44172 * 85.52040 * 223.19819 * 16 5 4 18 18 C 1.44177 * 93.34340 * 24.18785 * 17 16 5 19 19 H 1.09004 * 109.47091 * 59.99699 * 1 2 3 20 20 H 1.09001 * 109.47296 * 299.99973 * 1 2 3 21 21 H 1.09005 * 109.47369 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46896 * 239.99784 * 2 1 3 23 23 H 1.08994 * 109.47106 * 175.18236 * 3 2 1 24 24 H 1.09003 * 109.47140 * 295.18817 * 3 2 1 25 25 H 1.09004 * 109.46765 * 55.18541 * 3 2 1 26 26 H 1.08999 * 109.47010 * 185.65382 * 4 2 1 27 27 H 1.08995 * 109.47158 * 305.65085 * 4 2 1 28 28 H 1.09003 * 109.46621 * 294.74064 * 6 5 4 29 29 H 1.08994 * 109.47337 * 54.73793 * 6 5 4 30 30 H 0.96986 * 120.00004 * 179.97438 * 11 10 8 31 31 H 1.09004 * 113.86412 * 337.34678 * 16 5 4 32 32 H 1.08994 * 113.86702 * 109.04515 * 16 5 4 33 33 H 1.08993 * 113.86862 * 221.65852 * 18 17 16 34 34 H 1.08999 * 113.85823 * 89.95402 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6493 -2.1989 1.1802 6 6 1.8792 -2.8142 -0.2017 7 8 1.6076 -4.2162 -0.1502 8 6 1.7641 -4.9129 -1.2950 9 1 2.0811 -4.4079 -2.1954 10 6 1.5180 -6.2771 -1.3154 11 7 1.1323 -6.8925 -0.2181 12 14 1.7340 -7.2415 -2.9005 13 1 3.1398 -7.1237 -3.3639 14 1 1.4113 -8.6707 -2.6582 15 1 0.8230 -6.6972 -3.9392 16 6 0.2625 -2.5043 1.7770 17 8 0.9000 -3.6466 2.3832 18 6 2.2097 -3.0454 2.3388 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 3.1266 1.4436 0.0863 24 1 1.7488 1.9308 -0.9300 25 1 1.6080 1.9805 0.8438 26 1 3.1252 -0.6345 1.3014 27 1 1.5963 -0.2693 2.1363 28 1 1.2144 -2.3416 -0.9249 29 1 2.9147 -2.6555 -0.5024 30 1 0.9597 -7.8468 -0.2325 31 1 -0.0826 -1.7596 2.4944 32 1 -0.4907 -2.7629 1.0329 33 1 3.0008 -3.7331 2.0401 34 1 2.4591 -2.4659 3.2276 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260414661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:36 Heat of formation + Delta-G solvation = -59.402792 kcal Electronic energy + Delta-G solvation = -15230.980089 eV Core-core repulsion = 12744.653941 eV Total energy + Delta-G solvation = -2486.326148 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.17578 -36.18577 -35.65405 -31.71848 -30.49960 -27.27415 -25.91810 -25.65971 -24.86472 -23.71412 -19.93215 -18.24032 -17.43065 -15.79513 -15.47989 -15.29808 -14.65463 -14.37720 -13.80923 -13.75132 -13.47155 -12.94406 -12.35045 -12.09447 -11.91156 -11.75463 -11.41556 -11.30499 -10.92364 -10.89204 -10.78898 -10.37347 -10.10430 -10.03258 -9.62149 -9.32948 -9.08775 -8.68108 -7.86031 -5.83213 -3.48414 3.35788 3.37568 3.40979 4.33399 4.48192 4.64306 4.96045 5.06392 5.14886 5.37132 5.46682 5.52108 5.68712 5.72265 5.75900 5.84437 5.86400 5.95331 6.05826 6.13788 6.23501 6.33902 6.40212 6.46937 6.53190 6.63753 6.70003 6.72774 6.82539 7.04417 7.54134 8.51761 9.57831 10.28592 11.36197 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036510 B = 0.008685 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.723938 B = 3223.200662 C = 3665.649330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.102 4.102 5 C -0.119 4.119 6 C 0.094 3.906 7 O -0.278 6.278 8 C -0.366 4.366 9 H 0.058 0.942 10 C 0.026 3.974 11 N -0.879 5.879 12 Si 0.920 3.080 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.279 1.279 16 C 0.048 3.952 17 O -0.348 6.348 18 C 0.049 3.951 19 H 0.049 0.951 20 H 0.050 0.950 21 H 0.065 0.935 22 H 0.076 0.924 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.024 0.976 30 H 0.257 0.743 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 14.000 1.988 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.120 4.120 3 C -0.202 4.202 4 C -0.139 4.139 5 C -0.119 4.119 6 C 0.017 3.983 7 O -0.192 6.192 8 C -0.445 4.445 9 H 0.076 0.924 10 C -0.173 4.173 11 N -0.522 5.522 12 Si 0.748 3.252 13 H -0.205 1.205 14 H -0.209 1.209 15 H -0.205 1.205 16 C -0.029 4.029 17 O -0.266 6.266 18 C -0.029 4.029 19 H 0.068 0.932 20 H 0.070 0.930 21 H 0.083 0.917 22 H 0.094 0.906 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.767 13.482 2.317 13.701 hybrid contribution 0.279 -0.162 -1.133 1.178 sum 1.046 13.320 1.184 13.413 Atomic orbital electron populations 1.21945 0.95283 1.02582 1.01025 1.21175 0.96155 0.95573 0.99048 1.21843 1.00726 0.96372 1.01297 1.21651 1.00779 0.93715 0.97783 1.23648 0.96599 0.94372 0.97316 1.21786 0.97424 0.87313 0.91826 1.85776 1.87569 1.13283 1.32621 1.20724 1.45580 0.90803 0.87424 0.92433 1.24920 0.98962 0.95874 0.97549 1.70059 1.46895 1.09133 1.26067 0.86131 0.78236 0.79101 0.81763 1.20525 1.20922 1.20518 1.23917 0.95772 0.88097 0.95105 1.89850 1.18990 1.34131 1.83607 1.23796 0.89221 0.94917 0.94922 0.93152 0.93045 0.91651 0.90566 0.92915 0.93006 0.93020 0.91711 0.91737 0.95187 0.95797 0.93344 0.91845 0.89548 0.89103 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.50 37.16 0.32 -1.58 16 2 C -0.10 -1.29 2.43 -90.62 -0.22 -1.52 16 3 C -0.15 -1.51 9.19 37.15 0.34 -1.17 16 4 C -0.10 -1.38 4.39 -26.73 -0.12 -1.50 16 5 C -0.12 -2.14 0.77 -153.43 -0.12 -2.26 16 6 C 0.09 2.07 4.47 37.16 0.17 2.24 16 7 O -0.28 -8.00 8.17 -33.86 -0.28 -8.27 16 8 C -0.37 -10.95 9.89 30.88 0.31 -10.65 16 9 H 0.06 1.62 7.77 -52.49 -0.41 1.21 16 10 C 0.03 0.78 5.49 -17.51 -0.10 0.68 16 11 N -0.88 -28.35 13.68 55.48 0.76 -27.59 16 12 Si 0.92 22.54 29.55 -169.99 -5.02 17.52 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.05 0.90 6.46 37.61 0.24 1.15 16 17 O -0.35 -8.10 11.61 -52.61 -0.61 -8.71 16 18 C 0.05 0.94 7.99 37.61 0.30 1.24 16 19 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.06 0.95 5.13 -51.93 -0.27 0.68 16 22 H 0.08 1.09 6.37 -51.93 -0.33 0.76 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 28 H 0.03 0.64 6.31 -51.93 -0.33 0.31 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 31 H 0.06 0.97 7.90 -51.93 -0.41 0.56 16 32 H 0.09 1.73 7.40 -51.93 -0.38 1.35 16 33 H 0.09 1.92 8.03 -51.93 -0.42 1.50 16 34 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 274.09 15.07 4.13 4.13 Total: -1.00 -34.06 274.09 -5.37 -39.43 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -5.47 Total: -3.13 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 1.12 Total: -13.38 kcal Atomic # 7 Polarization: -28.35 SS G_CDS: 0.76 Total: -27.59 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.89 Total: -16.98 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.06 -5.37 -39.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.971 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds