Wall clock time and date at job start Mon Mar 30 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47382 * 2 1 4 4 C 1.53001 * 109.46701 * 120.00254 * 2 1 3 5 5 C 1.52994 * 109.47360 * 65.65457 * 4 2 1 6 6 C 1.53002 * 113.00182 * 43.63773 * 5 4 2 7 7 O 1.42899 * 109.47484 * 174.74148 * 6 5 4 8 8 C 1.34921 * 117.00041 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00303 * 359.97438 * 8 7 6 10 10 C 1.38638 * 120.00136 * 179.97438 * 8 7 6 11 11 N 1.31590 * 120.00013 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00110 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47044 * 60.00174 * 12 10 8 14 14 H 1.48508 * 109.47008 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47502 * 299.99879 * 12 10 8 16 16 C 1.54035 * 113.81979 * 271.64917 * 5 4 2 17 17 O 1.44172 * 85.52040 * 223.19819 * 16 5 4 18 18 C 1.44177 * 93.34340 * 24.18785 * 17 16 5 19 19 H 1.09004 * 109.47091 * 59.99699 * 1 2 3 20 20 H 1.09001 * 109.47296 * 299.99973 * 1 2 3 21 21 H 1.09005 * 109.47369 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46896 * 239.99784 * 2 1 3 23 23 H 1.08994 * 109.47106 * 175.18236 * 3 2 1 24 24 H 1.09003 * 109.47140 * 295.18817 * 3 2 1 25 25 H 1.09004 * 109.46765 * 55.18541 * 3 2 1 26 26 H 1.08999 * 109.47010 * 185.65382 * 4 2 1 27 27 H 1.08995 * 109.47158 * 305.65085 * 4 2 1 28 28 H 1.09003 * 109.46621 * 294.74064 * 6 5 4 29 29 H 1.08994 * 109.47337 * 54.73793 * 6 5 4 30 30 H 0.96986 * 120.00004 * 179.97438 * 11 10 8 31 31 H 1.09004 * 113.86412 * 337.34678 * 16 5 4 32 32 H 1.08994 * 113.86702 * 109.04515 * 16 5 4 33 33 H 1.08993 * 113.86862 * 221.65852 * 18 17 16 34 34 H 1.08999 * 113.85823 * 89.95402 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6493 -2.1989 1.1802 6 6 1.8792 -2.8142 -0.2017 7 8 1.6076 -4.2162 -0.1502 8 6 1.7641 -4.9129 -1.2950 9 1 2.0811 -4.4079 -2.1954 10 6 1.5180 -6.2771 -1.3154 11 7 1.1323 -6.8925 -0.2181 12 14 1.7340 -7.2415 -2.9005 13 1 3.1398 -7.1237 -3.3639 14 1 1.4113 -8.6707 -2.6582 15 1 0.8230 -6.6972 -3.9392 16 6 0.2625 -2.5043 1.7770 17 8 0.9000 -3.6466 2.3832 18 6 2.2097 -3.0454 2.3388 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 3.1266 1.4436 0.0863 24 1 1.7488 1.9308 -0.9300 25 1 1.6080 1.9805 0.8438 26 1 3.1252 -0.6345 1.3014 27 1 1.5963 -0.2693 2.1363 28 1 1.2144 -2.3416 -0.9249 29 1 2.9147 -2.6555 -0.5024 30 1 0.9597 -7.8468 -0.2325 31 1 -0.0826 -1.7596 2.4944 32 1 -0.4907 -2.7629 1.0329 33 1 3.0008 -3.7331 2.0401 34 1 2.4591 -2.4659 3.2276 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260414661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:36 Heat of formation + Delta-G solvation = -82.534152 kcal Electronic energy + Delta-G solvation = -15231.983140 eV Core-core repulsion = 12744.653941 eV Total energy + Delta-G solvation = -2487.329199 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.70367 -37.89931 -37.16681 -33.90005 -32.01135 -28.31772 -27.65975 -27.05262 -26.27009 -25.80123 -20.98759 -19.87104 -19.47064 -17.59246 -16.99149 -16.89706 -16.40470 -15.67723 -15.60241 -15.45477 -14.72448 -14.36952 -13.89464 -13.43966 -13.29261 -13.15053 -12.88954 -12.80644 -12.52725 -12.39656 -12.05401 -11.93186 -11.59930 -11.47379 -11.18881 -11.10331 -10.85418 -10.28470 -10.09083 -8.12154 -5.82876 1.37429 1.45473 1.52542 2.33308 2.93749 3.15119 3.25910 3.69481 3.81171 4.08634 4.15327 4.20323 4.39715 4.46004 4.67191 4.68800 4.75364 4.84409 4.85245 4.87862 4.90497 5.03755 5.12208 5.15024 5.18249 5.23648 5.31950 5.44607 5.49576 5.55246 5.58040 6.22942 7.28580 8.13123 9.11225 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036510 B = 0.008685 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.723938 B = 3223.200662 C = 3665.649330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 C -0.139 4.139 4 C -0.092 4.092 5 C -0.108 4.108 6 C 0.088 3.912 7 O -0.316 6.316 8 C -0.383 4.383 9 H 0.068 0.932 10 C -0.041 4.041 11 N -0.932 5.932 12 Si 1.002 2.998 13 H -0.264 1.264 14 H -0.280 1.280 15 H -0.265 1.265 16 C 0.052 3.948 17 O -0.403 6.403 18 C 0.047 3.953 19 H 0.056 0.944 20 H 0.070 0.930 21 H 0.038 0.962 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.034 0.966 29 H 0.025 0.975 30 H 0.258 0.742 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.380 15.983 1.645 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 C -0.196 4.196 4 C -0.129 4.129 5 C -0.108 4.108 6 C 0.011 3.989 7 O -0.232 6.232 8 C -0.462 4.462 9 H 0.085 0.915 10 C -0.234 4.234 11 N -0.577 5.577 12 Si 0.824 3.176 13 H -0.189 1.189 14 H -0.205 1.205 15 H -0.189 1.189 16 C -0.025 4.025 17 O -0.322 6.322 18 C -0.030 4.030 19 H 0.076 0.924 20 H 0.089 0.911 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.185 15.508 1.965 15.677 hybrid contribution 0.149 -0.695 -1.000 1.227 sum 1.334 14.813 0.965 14.904 Atomic orbital electron populations 1.21941 0.95193 1.01254 1.02422 1.21165 0.96255 0.97028 0.97650 1.21779 1.01100 0.94421 1.02304 1.21647 1.01810 0.90102 0.99362 1.23472 0.96133 0.96885 0.94316 1.22062 0.97379 0.84423 0.94998 1.85725 1.87976 1.16646 1.32808 1.21278 1.45094 0.91641 0.88181 0.91454 1.26192 0.98419 0.96959 1.01842 1.70263 1.48707 1.09505 1.29208 0.84891 0.79055 0.77010 0.76661 1.18895 1.20502 1.18948 1.24097 0.95390 0.87553 0.95439 1.89795 1.21164 1.37010 1.84204 1.23978 0.87102 0.94576 0.97310 0.92445 0.91064 0.94258 0.92847 0.92356 0.92488 0.91492 0.90491 0.88959 0.94809 0.95669 0.93371 0.87446 0.92075 0.92369 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.50 71.98 0.61 -2.87 16 2 C -0.10 -2.38 2.43 -10.79 -0.03 -2.41 16 3 C -0.14 -2.41 9.19 71.98 0.66 -1.75 16 4 C -0.09 -2.22 4.39 30.59 0.13 -2.09 16 5 C -0.11 -3.80 0.77 -51.48 -0.04 -3.84 16 6 C 0.09 3.97 4.47 71.98 0.32 4.29 16 7 O -0.32 -18.90 8.17 -65.29 -0.53 -19.43 16 8 C -0.38 -23.48 9.89 67.92 0.67 -22.81 16 9 H 0.07 3.84 7.77 -2.91 -0.02 3.82 16 10 C -0.04 -2.49 5.49 84.82 0.47 -2.02 16 11 N -0.93 -62.12 13.68 21.61 0.30 -61.82 16 12 Si 1.00 46.72 29.55 68.60 2.03 48.75 16 13 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 15 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 16 C 0.05 1.91 6.46 72.27 0.47 2.37 16 17 O -0.40 -19.10 11.61 -132.37 -1.54 -20.64 16 18 C 0.05 1.79 7.99 72.28 0.58 2.37 16 19 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 20 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.04 1.11 5.13 -2.38 -0.01 1.09 16 22 H 0.05 1.48 6.37 -2.39 -0.02 1.46 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.09 1.79 7.84 -2.39 -0.02 1.77 16 28 H 0.03 1.48 6.31 -2.39 -0.02 1.46 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.26 16.05 8.31 -92.72 -0.77 15.27 16 31 H 0.11 2.98 7.90 -2.38 -0.02 2.96 16 32 H 0.06 2.53 7.40 -2.39 -0.02 2.51 16 33 H 0.06 2.55 8.03 -2.39 -0.02 2.53 16 34 H 0.11 3.10 8.10 -2.39 -0.02 3.08 16 Total: -1.00 -76.78 274.09 5.15 -71.62 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.06 Total: 10.28 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 3.85 Total: -28.76 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.30 Total: -61.82 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -2.07 Total: -40.07 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -76.78 5.15 -71.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260414661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.910 kcal (2) G-P(sol) polarization free energy of solvation -76.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds