Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47026 * 2 1 4 4 C 1.50699 * 109.47440 * 239.99906 * 2 1 3 5 5 H 1.07994 * 120.00159 * 239.99865 * 4 2 1 6 6 C 1.37881 * 119.99740 * 59.99918 * 4 2 1 7 7 N 1.31513 * 120.00163 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99591 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47307 * 90.00122 * 8 6 4 10 10 H 1.48508 * 109.46761 * 209.99730 * 8 6 4 11 11 H 1.48497 * 109.47166 * 329.99387 * 8 6 4 12 12 C 1.53005 * 109.47372 * 119.99762 * 2 1 3 13 13 H 1.08999 * 109.10187 * 180.79712 * 12 2 1 14 14 C 1.50760 * 109.15399 * 300.00314 * 12 2 1 15 15 C 1.53856 * 108.72953 * 216.41193 * 14 12 2 16 16 C 1.44530 * 113.23664 * 273.49721 * 15 14 12 17 17 C 1.53859 * 113.23474 * 65.77824 * 16 15 14 18 18 C 1.50752 * 108.57453 * 273.58323 * 17 16 15 19 19 S 1.82407 * 111.08857 * 95.91447 * 18 17 16 20 20 H 1.09007 * 109.46617 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46921 * 299.99961 * 1 2 3 22 22 H 1.08994 * 109.46890 * 60.00225 * 1 2 3 23 23 H 0.96995 * 120.00035 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.62004 * 96.59196 * 14 12 2 25 25 H 1.08998 * 109.61853 * 336.22980 * 14 12 2 26 26 H 1.09001 * 108.73295 * 34.47174 * 15 14 12 27 27 H 1.09000 * 108.73054 * 152.65421 * 15 14 12 28 28 H 1.08996 * 108.73064 * 186.74556 * 16 15 14 29 29 H 1.09001 * 108.73110 * 304.93278 * 16 15 14 30 30 H 1.09002 * 109.62088 * 33.30875 * 17 16 15 31 31 H 1.09001 * 109.62116 * 153.85871 * 17 16 15 32 32 H 1.08997 * 109.15675 * 216.32653 * 18 17 16 33 33 H 1.09006 * 109.15761 * 335.55574 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3430 -2.1617 -4.4118 10 1 2.4867 -0.1413 -5.1122 11 1 3.6295 -1.7582 -3.7121 12 6 2.0401 -0.7212 1.2493 13 1 3.1300 -0.7053 1.2504 14 6 1.5336 -0.0050 2.4754 15 6 2.6244 -0.0495 3.5595 16 6 2.5755 -1.2459 4.3689 17 6 2.8945 -2.5269 3.5787 18 6 1.6218 -3.0314 2.9476 19 16 1.4712 -2.4559 1.2233 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7082 1.1608 -3.4844 24 1 0.6332 -0.4983 2.8417 25 1 1.3073 1.0317 2.2263 26 1 3.6001 0.0069 3.0768 27 1 2.5063 0.8166 4.2107 28 1 3.2946 -1.1480 5.1821 29 1 1.5767 -1.3394 4.7952 30 1 3.6255 -2.3047 2.8011 31 1 3.2932 -3.2838 4.2541 32 1 1.6230 -4.1213 2.9621 33 1 0.7694 -2.6671 3.5211 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260433687.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = -25.526858 kcal Electronic energy + Delta-G solvation = -13070.892307 eV Core-core repulsion = 11028.788001 eV Total energy + Delta-G solvation = -2042.104306 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.80240 -34.95648 -32.12597 -30.35490 -27.76544 -25.25780 -24.09852 -21.68166 -20.37808 -19.38848 -16.42732 -15.59717 -15.03271 -14.73762 -14.38925 -13.77722 -13.41064 -13.01706 -12.34521 -12.25780 -12.07018 -11.55305 -11.18337 -10.96912 -10.69251 -10.61627 -10.42834 -10.34500 -10.26641 -10.03563 -9.73209 -9.15422 -8.98033 -8.53978 -8.24608 -6.71739 -5.92272 -3.96790 2.50431 3.36705 3.42845 3.47110 3.50908 4.50675 4.82418 4.93641 5.22273 5.36574 5.40195 5.50691 5.71722 5.82030 5.92582 6.01681 6.10854 6.22519 6.28497 6.36625 6.47069 6.50354 6.71778 6.72823 7.00052 7.26900 7.42131 7.78739 8.00129 8.20953 8.49022 9.05956 9.67174 11.13720 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.044489 B = 0.009605 C = 0.008831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.216712 B = 2914.563162 C = 3169.839615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.059 3.941 3 H 0.035 0.965 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 C -0.023 4.023 13 H 0.071 0.929 14 C -0.117 4.117 15 C -0.125 4.125 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.104 4.104 19 S -0.243 6.243 20 H 0.041 0.959 21 H 0.006 0.994 22 H 0.079 0.921 23 H 0.258 0.742 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 -3.303 11.648 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.039 3.961 3 H 0.053 0.947 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.718 3.282 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.151 4.151 13 H 0.090 0.910 14 C -0.156 4.156 15 C -0.163 4.163 16 C -0.154 4.154 17 C -0.159 4.159 18 C -0.252 4.252 19 S -0.016 6.016 20 H 0.060 0.940 21 H 0.025 0.975 22 H 0.098 0.902 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.559 -3.781 10.663 11.421 hybrid contribution 0.704 0.219 0.154 0.753 sum 2.263 -3.562 10.817 11.611 Atomic orbital electron populations 1.21873 0.98022 1.00100 0.99685 1.18710 0.93412 0.94807 0.89126 0.94680 1.21214 1.30924 1.11995 0.90269 0.91945 1.24929 0.95144 0.94955 0.98917 1.69888 1.36991 1.23098 1.23167 0.86626 0.79361 0.79414 0.82830 1.20726 1.21448 1.19908 1.23270 1.01202 0.91043 0.99578 0.91042 1.21795 0.97722 1.01750 0.94293 1.20335 1.00124 0.97669 0.98146 1.20275 1.01565 0.95139 0.98417 1.21624 0.97357 0.97068 0.99841 1.23300 0.99876 1.03072 0.98950 1.87406 1.87973 1.17188 1.09065 0.94038 0.97515 0.90245 0.93166 0.91694 0.90716 0.91993 0.92501 0.92568 0.92339 0.90755 0.91735 0.89472 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 8.50 37.16 0.32 -3.08 16 2 C 0.06 1.46 1.90 -91.77 -0.17 1.28 16 3 H 0.04 0.94 8.10 -51.93 -0.42 0.52 16 4 C -0.51 -13.92 7.87 -34.44 -0.27 -14.19 16 5 H 0.06 1.74 7.28 -52.49 -0.38 1.36 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.78 11.32 55.43 0.63 -25.15 16 8 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 C -0.02 -0.46 1.71 -27.85 -0.05 -0.51 16 13 H 0.07 1.49 6.88 -51.93 -0.36 1.13 16 14 C -0.12 -1.99 4.00 -27.41 -0.11 -2.10 16 15 C -0.13 -1.76 5.14 -30.23 -0.16 -1.91 16 16 C -0.12 -1.46 5.14 -30.23 -0.16 -1.61 16 17 C -0.12 -1.61 5.59 -27.41 -0.15 -1.76 16 18 C -0.10 -1.56 5.76 36.03 0.21 -1.35 16 19 S -0.24 -4.88 18.83 -107.50 -2.02 -6.91 16 20 H 0.04 1.02 6.98 -51.93 -0.36 0.66 16 21 H 0.01 0.13 6.99 -51.93 -0.36 -0.23 16 22 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.06 1.11 6.96 -51.93 -0.36 0.75 16 25 H 0.07 1.31 7.34 -51.93 -0.38 0.93 16 26 H 0.06 0.90 7.23 -51.93 -0.38 0.52 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.71 7.21 -51.93 -0.37 0.34 16 30 H 0.07 1.12 6.98 -51.93 -0.36 0.76 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.03 6.85 -51.92 -0.36 0.67 16 LS Contribution 257.64 15.07 3.88 3.88 Total: -1.00 -28.31 257.64 -8.41 -36.72 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -5.24 Total: -1.79 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -0.64 Total: -23.61 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.63 Total: -25.15 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -2.02 Total: -6.91 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.31 -8.41 -36.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433687.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.191 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds