Wall clock time and date at job start Mon Mar 30 2020 02:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47460 * 2 1 4 4 C 1.50699 * 109.47464 * 120.00136 * 2 1 3 5 5 H 1.08002 * 120.00080 * 119.99345 * 4 2 1 6 6 C 1.37882 * 120.00065 * 300.00338 * 4 2 1 7 7 N 1.31511 * 120.00007 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99706 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46894 * 90.00264 * 8 6 4 10 10 H 1.48497 * 109.46933 * 209.99995 * 8 6 4 11 11 H 1.48496 * 109.47587 * 330.00362 * 8 6 4 12 12 C 1.52998 * 109.47377 * 240.00140 * 2 1 3 13 13 H 1.08991 * 109.40558 * 184.88688 * 12 2 1 14 14 C 1.55250 * 109.43290 * 64.99799 * 12 2 1 15 15 C 1.44826 * 110.44993 * 166.67348 * 14 12 2 16 16 C 1.53075 * 115.41611 * 64.06474 * 15 14 12 17 17 C 1.51416 * 105.01363 * 265.41602 * 16 15 14 18 18 C 1.54623 * 109.11366 * 105.43888 * 17 16 15 19 19 S 1.79264 * 109.43380 * 304.77982 * 12 2 1 20 20 H 1.08998 * 109.46736 * 300.00057 * 1 2 3 21 21 H 1.09004 * 109.46942 * 59.99794 * 1 2 3 22 22 H 1.08999 * 109.47181 * 179.97438 * 1 2 3 23 23 H 0.96996 * 119.99876 * 179.97438 * 7 6 4 24 24 H 1.08993 * 109.30378 * 46.37524 * 14 12 2 25 25 H 1.08998 * 109.14813 * 286.87090 * 14 12 2 26 26 H 1.09006 * 108.29083 * 302.52457 * 15 14 12 27 27 H 1.08998 * 108.14649 * 185.49445 * 15 14 12 28 28 H 1.09000 * 110.32252 * 146.54826 * 16 15 14 29 29 H 1.08997 * 110.32674 * 24.28763 * 16 15 14 30 30 H 1.08998 * 109.53464 * 225.33135 * 17 16 15 31 31 H 1.09005 * 109.52967 * 345.55410 * 17 16 15 32 32 H 1.09003 * 109.18027 * 81.12705 * 18 17 16 33 33 H 1.09001 * 109.18716 * 200.37935 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 2.1373 -0.8597 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8742 2.6994 10 1 0.9771 1.9952 3.9071 11 1 0.8489 2.1772 1.4924 12 6 2.0400 -0.7212 -1.2492 13 1 3.1264 -0.7970 -1.2054 14 6 1.6288 0.0813 -2.5130 15 6 2.3523 -0.3962 -3.6732 16 6 2.0583 -1.8419 -4.0816 17 6 3.1375 -2.6660 -3.4114 18 6 2.5255 -3.4183 -2.2071 19 16 1.3297 -2.3656 -1.3204 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.9033 -0.5281 4.4375 24 1 1.8524 1.1367 -2.3582 25 1 0.5586 -0.0395 -2.6808 26 1 3.4198 -0.3081 -3.4709 27 1 2.1106 0.2529 -4.5148 28 1 2.1180 -1.9490 -5.1646 29 1 1.0741 -2.1439 -3.7234 30 1 3.5416 -3.3855 -4.1235 31 1 3.9346 -2.0088 -3.0636 32 1 2.0178 -4.3140 -2.5649 33 1 3.3232 -3.7087 -1.5233 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260433693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:22 Heat of formation + Delta-G solvation = -13.083817 kcal Electronic energy + Delta-G solvation = -13138.112452 eV Core-core repulsion = 11096.547716 eV Total energy + Delta-G solvation = -2041.564736 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.67547 -35.05505 -32.25269 -30.82184 -27.63821 -25.28664 -24.47832 -21.61110 -20.52171 -19.58605 -16.65521 -15.64204 -15.19206 -14.62095 -14.35381 -14.17902 -13.46737 -13.01090 -12.86253 -12.34876 -12.15989 -11.92773 -11.46049 -10.95114 -10.85341 -10.72953 -10.58473 -10.36327 -10.16437 -9.98552 -9.80753 -9.20153 -8.99121 -8.73417 -8.45244 -6.66103 -5.97389 -3.94584 2.39591 3.32996 3.41524 3.44154 3.49609 4.48086 4.90223 4.95028 5.10622 5.35242 5.36628 5.41680 5.64202 5.83854 5.88684 6.02535 6.04483 6.10092 6.17266 6.30230 6.39013 6.45996 6.49867 6.51084 6.65009 6.79846 6.86255 7.10641 7.48265 7.81200 8.60921 9.09171 9.64327 11.15762 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.045848 B = 0.010466 C = 0.009376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.567544 B = 2674.576663 C = 2985.731528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.026 3.974 3 H 0.035 0.965 4 C -0.500 4.500 5 H 0.080 0.920 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.300 1.300 11 H -0.268 1.268 12 C -0.031 4.031 13 H 0.076 0.924 14 C -0.114 4.114 15 C -0.119 4.119 16 C -0.132 4.132 17 C -0.123 4.123 18 C -0.103 4.103 19 S -0.222 6.222 20 H 0.038 0.962 21 H 0.030 0.970 22 H 0.061 0.939 23 H 0.261 0.739 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -0.491 -13.946 13.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.006 3.994 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.098 0.902 6 C -0.132 4.132 7 N -0.541 5.541 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.228 1.228 11 H -0.194 1.194 12 C -0.160 4.160 13 H 0.094 0.906 14 C -0.153 4.153 15 C -0.156 4.156 16 C -0.170 4.170 17 C -0.162 4.162 18 C -0.251 4.251 19 S 0.007 5.993 20 H 0.056 0.944 21 H 0.049 0.951 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.299 -0.823 -13.328 13.416 hybrid contribution 0.681 1.168 -0.171 1.363 sum -0.618 0.345 -13.499 13.517 Atomic orbital electron populations 1.22210 0.98991 1.01067 0.98377 1.19093 0.92185 0.95792 0.92349 0.94738 1.21029 1.31537 1.13084 0.88169 0.90211 1.24974 0.95820 0.96520 0.95937 1.69893 1.46079 1.40365 0.97794 0.86884 0.80807 0.84009 0.76611 1.20765 1.22779 1.19379 1.23355 1.01730 0.92868 0.98036 0.90553 1.20755 1.01110 0.99371 0.94103 1.20319 1.00576 0.96534 0.98192 1.21725 1.00947 0.95148 0.99174 1.22049 0.98383 0.99214 0.96532 1.24006 1.01753 1.00487 0.98889 1.86201 1.31395 1.08590 1.73139 0.94368 0.95086 0.92050 0.92867 0.91562 0.91196 0.92702 0.93126 0.92232 0.88929 0.91934 0.91614 0.89047 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.13 37.16 0.30 -3.01 16 2 C 0.03 0.60 1.65 -91.77 -0.15 0.45 16 3 H 0.03 0.82 7.16 -51.93 -0.37 0.45 16 4 C -0.50 -13.98 8.55 -34.44 -0.29 -14.27 16 5 H 0.08 2.43 7.82 -52.49 -0.41 2.02 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 8 Si 0.89 22.35 24.37 -169.99 -4.14 18.20 16 9 H -0.28 -6.98 6.87 56.52 0.39 -6.59 16 10 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 11 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 12 C -0.03 -0.60 1.77 -25.54 -0.05 -0.65 16 13 H 0.08 1.55 7.88 -51.76 -0.41 1.14 16 14 C -0.11 -1.81 4.22 -29.36 -0.12 -1.94 16 15 C -0.12 -1.60 4.95 -30.52 -0.15 -1.75 16 16 C -0.13 -1.68 5.78 -27.49 -0.16 -1.84 16 17 C -0.12 -1.60 5.69 -26.68 -0.15 -1.75 16 18 C -0.10 -1.57 6.60 38.01 0.25 -1.32 16 19 S -0.22 -4.26 16.93 -107.50 -1.82 -6.08 16 20 H 0.04 0.89 3.27 -51.93 -0.17 0.72 16 21 H 0.03 0.59 6.88 -51.93 -0.36 0.23 16 22 H 0.06 1.39 6.73 -51.93 -0.35 1.04 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 25 H 0.07 1.12 7.22 -51.93 -0.37 0.74 16 26 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 27 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.30 6.23 -51.93 -0.32 0.98 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.90 6.55 -51.93 -0.34 0.56 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 252.06 15.07 3.80 3.80 Total: -1.00 -29.71 252.06 -7.18 -36.89 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.16 Total: -1.42 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -0.62 Total: -24.19 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.77 Total: -27.20 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.20 kcal Atomic # 16 Polarization: -4.26 SS G_CDS: -1.82 Total: -6.08 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.71 -7.18 -36.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.807 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds