Wall clock time and date at job start Mon Mar 30 2020 02:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47460 * 2 1 4 4 C 1.50699 * 109.47464 * 120.00136 * 2 1 3 5 5 H 1.08002 * 120.00080 * 119.99345 * 4 2 1 6 6 C 1.37882 * 120.00065 * 300.00338 * 4 2 1 7 7 N 1.31511 * 120.00007 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99706 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46894 * 90.00264 * 8 6 4 10 10 H 1.48497 * 109.46933 * 209.99995 * 8 6 4 11 11 H 1.48496 * 109.47587 * 330.00362 * 8 6 4 12 12 C 1.52998 * 109.47377 * 240.00140 * 2 1 3 13 13 H 1.08991 * 109.40558 * 184.88688 * 12 2 1 14 14 C 1.55250 * 109.43290 * 64.99799 * 12 2 1 15 15 C 1.44826 * 110.44993 * 166.67348 * 14 12 2 16 16 C 1.53075 * 115.41611 * 64.06474 * 15 14 12 17 17 C 1.51416 * 105.01363 * 265.41602 * 16 15 14 18 18 C 1.54623 * 109.11366 * 105.43888 * 17 16 15 19 19 S 1.79264 * 109.43380 * 304.77982 * 12 2 1 20 20 H 1.08998 * 109.46736 * 300.00057 * 1 2 3 21 21 H 1.09004 * 109.46942 * 59.99794 * 1 2 3 22 22 H 1.08999 * 109.47181 * 179.97438 * 1 2 3 23 23 H 0.96996 * 119.99876 * 179.97438 * 7 6 4 24 24 H 1.08993 * 109.30378 * 46.37524 * 14 12 2 25 25 H 1.08998 * 109.14813 * 286.87090 * 14 12 2 26 26 H 1.09006 * 108.29083 * 302.52457 * 15 14 12 27 27 H 1.08998 * 108.14649 * 185.49445 * 15 14 12 28 28 H 1.09000 * 110.32252 * 146.54826 * 16 15 14 29 29 H 1.08997 * 110.32674 * 24.28763 * 16 15 14 30 30 H 1.08998 * 109.53464 * 225.33135 * 17 16 15 31 31 H 1.09005 * 109.52967 * 345.55410 * 17 16 15 32 32 H 1.09003 * 109.18027 * 81.12705 * 18 17 16 33 33 H 1.09001 * 109.18716 * 200.37935 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 2.1373 -0.8597 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8742 2.6994 10 1 0.9771 1.9952 3.9071 11 1 0.8489 2.1772 1.4924 12 6 2.0400 -0.7212 -1.2492 13 1 3.1264 -0.7970 -1.2054 14 6 1.6288 0.0813 -2.5130 15 6 2.3523 -0.3962 -3.6732 16 6 2.0583 -1.8419 -4.0816 17 6 3.1375 -2.6660 -3.4114 18 6 2.5255 -3.4183 -2.2071 19 16 1.3297 -2.3656 -1.3204 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.9033 -0.5281 4.4375 24 1 1.8524 1.1367 -2.3582 25 1 0.5586 -0.0395 -2.6808 26 1 3.4198 -0.3081 -3.4709 27 1 2.1106 0.2529 -4.5148 28 1 2.1180 -1.9490 -5.1646 29 1 1.0741 -2.1439 -3.7234 30 1 3.5416 -3.3855 -4.1235 31 1 3.9346 -2.0088 -3.0636 32 1 2.0178 -4.3140 -2.5649 33 1 3.3232 -3.7087 -1.5233 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:22 Heat of formation + Delta-G solvation = -30.623630 kcal Electronic energy + Delta-G solvation = -13138.873035 eV Core-core repulsion = 11096.547716 eV Total energy + Delta-G solvation = -2042.325319 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.94492 -36.68564 -34.10975 -32.40120 -29.01524 -27.19182 -26.03230 -22.85584 -21.84381 -21.17712 -18.74246 -17.16640 -16.78224 -16.29523 -15.63898 -15.36446 -14.91832 -14.74548 -14.44731 -14.13590 -13.60619 -13.44275 -12.79796 -12.68626 -12.46762 -12.17703 -12.09267 -11.81668 -11.55842 -11.47157 -11.24273 -11.06503 -10.81927 -10.68733 -10.22100 -8.25518 -8.13733 -6.22751 0.98254 1.32751 1.36153 1.46794 2.06099 2.36351 3.13716 3.78248 3.82504 3.99572 4.14577 4.19980 4.33320 4.46051 4.62679 4.69610 4.74943 4.85858 4.88377 5.00388 5.04463 5.05950 5.20508 5.28164 5.32642 5.39270 5.45472 5.59252 5.66782 5.73162 6.38225 6.81924 7.39171 8.94762 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.045848 B = 0.010466 C = 0.009376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.567544 B = 2674.576663 C = 2985.731528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.021 3.979 3 H 0.036 0.964 4 C -0.495 4.495 5 H 0.037 0.963 6 C 0.006 3.994 7 N -0.954 5.954 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.303 1.303 11 H -0.244 1.244 12 C -0.023 4.023 13 H 0.059 0.941 14 C -0.103 4.103 15 C -0.121 4.121 16 C -0.128 4.128 17 C -0.118 4.118 18 C -0.090 4.090 19 S -0.277 6.277 20 H 0.027 0.973 21 H 0.065 0.935 22 H 0.050 0.950 23 H 0.262 0.738 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 0.580 -16.629 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.002 3.998 3 H 0.054 0.946 4 C -0.534 4.534 5 H 0.055 0.945 6 C -0.189 4.189 7 N -0.595 5.595 8 Si 0.776 3.224 9 H -0.200 1.200 10 H -0.231 1.231 11 H -0.168 1.168 12 C -0.152 4.152 13 H 0.077 0.923 14 C -0.142 4.142 15 C -0.158 4.158 16 C -0.166 4.166 17 C -0.157 4.157 18 C -0.238 4.238 19 S -0.048 6.048 20 H 0.046 0.954 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.130 0.870 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.002 0.256 -16.042 16.169 hybrid contribution 0.989 0.696 0.642 1.370 sum -1.012 0.952 -15.400 15.463 Atomic orbital electron populations 1.22096 0.97599 1.00900 0.99474 1.19074 0.93264 0.95536 0.91967 0.94618 1.21283 1.30110 1.11649 0.90320 0.94466 1.25837 0.97555 0.99951 0.95597 1.70056 1.48389 1.42678 0.98423 0.85861 0.78996 0.80407 0.77152 1.19994 1.23086 1.16780 1.23220 1.00414 0.93149 0.98408 0.92268 1.20701 1.01587 0.99023 0.92916 1.20303 1.00070 0.97564 0.97854 1.21699 0.99893 0.94332 1.00650 1.22059 0.98210 0.99573 0.95872 1.24054 1.00307 1.00257 0.99146 1.86242 1.33506 1.09969 1.75091 0.95431 0.91573 0.93064 0.92944 0.90870 0.90841 0.92866 0.90637 0.89571 0.90144 0.89090 0.92508 0.87037 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.11 8.13 71.98 0.59 -5.53 16 2 C 0.02 0.98 1.65 -11.54 -0.02 0.96 16 3 H 0.04 1.64 7.16 -2.38 -0.02 1.62 16 4 C -0.50 -28.41 8.55 25.60 0.22 -28.19 16 5 H 0.04 2.39 7.82 -2.91 -0.02 2.37 16 6 C 0.01 0.37 5.45 84.66 0.46 0.84 16 7 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 8 Si 0.95 46.06 24.37 68.60 1.67 47.74 16 9 H -0.27 -12.89 6.87 99.48 0.68 -12.20 16 10 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 11 H -0.24 -10.78 6.53 99.48 0.65 -10.13 16 12 C -0.02 -0.88 1.77 31.37 0.06 -0.83 16 13 H 0.06 2.42 7.88 -2.50 -0.02 2.40 16 14 C -0.10 -3.00 4.22 28.89 0.12 -2.88 16 15 C -0.12 -2.84 4.95 28.14 0.14 -2.70 16 16 C -0.13 -2.81 5.78 30.10 0.17 -2.64 16 17 C -0.12 -2.76 5.69 30.63 0.17 -2.58 16 18 C -0.09 -2.62 6.60 72.53 0.48 -2.14 16 19 S -0.28 -10.55 16.93 -56.49 -0.96 -11.50 16 20 H 0.03 1.22 3.27 -2.39 -0.01 1.21 16 21 H 0.07 2.33 6.88 -2.38 -0.02 2.31 16 22 H 0.05 2.28 6.73 -2.39 -0.02 2.26 16 23 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 24 H 0.07 2.04 8.05 -2.39 -0.02 2.02 16 25 H 0.07 2.11 7.22 -2.39 -0.02 2.09 16 26 H 0.05 1.29 6.70 -2.38 -0.02 1.27 16 27 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 2.02 6.23 -2.39 -0.01 2.01 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.44 6.55 -2.38 -0.02 1.42 16 32 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -65.85 252.06 4.39 -61.45 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.99 Total: 8.91 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 2.39 Total: -45.69 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.30 Total: -60.91 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.67 Total: 47.74 kcal Atomic # 16 Polarization: -10.55 SS G_CDS: -0.96 Total: -11.50 kcal Total: -65.85 4.39 -61.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.831 kcal (2) G-P(sol) polarization free energy of solvation -65.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds