Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47169 * 2 1 4 4 C 1.50705 * 109.47077 * 119.99930 * 2 1 3 5 5 H 1.07998 * 120.00172 * 119.99764 * 4 2 1 6 6 C 1.37872 * 119.99847 * 299.72606 * 4 2 1 7 7 N 1.31516 * 120.00011 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00309 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46809 * 90.00261 * 8 6 4 10 10 H 1.48505 * 109.47459 * 210.00370 * 8 6 4 11 11 H 1.48498 * 109.47026 * 330.00232 * 8 6 4 12 12 C 1.52994 * 109.47180 * 239.99661 * 2 1 3 13 13 H 1.09000 * 109.52354 * 300.37329 * 12 2 1 14 14 C 1.50375 * 109.51846 * 60.54855 * 12 2 1 15 15 C 1.54973 * 116.52990 * 210.75775 * 14 12 2 16 16 C 1.53214 * 116.92931 * 313.81028 * 15 14 12 17 17 C 1.49728 * 110.25246 * 317.77547 * 16 15 14 18 18 C 1.52294 * 104.74889 * 99.50146 * 17 16 15 19 19 S 1.74435 * 114.79835 * 267.52289 * 18 17 16 20 20 H 1.08992 * 109.46906 * 53.09334 * 1 2 3 21 21 H 1.09002 * 109.46992 * 173.09871 * 1 2 3 22 22 H 1.09000 * 109.46922 * 293.09436 * 1 2 3 23 23 H 0.97002 * 120.00545 * 179.97438 * 7 6 4 24 24 H 1.08999 * 108.04035 * 332.53280 * 14 12 2 25 25 H 1.09001 * 108.04025 * 88.97778 * 14 12 2 26 26 H 1.09000 * 107.95373 * 191.93541 * 15 14 12 27 27 H 1.08996 * 107.95749 * 75.69132 * 15 14 12 28 28 H 1.08999 * 109.34007 * 197.53784 * 16 15 14 29 29 H 1.09002 * 109.21024 * 77.93178 * 16 15 14 30 30 H 1.08996 * 110.37374 * 340.69046 * 17 16 15 31 31 H 1.09001 * 110.51016 * 218.37296 * 17 16 15 32 32 H 1.08991 * 108.41774 * 146.14696 * 18 17 16 33 33 H 1.09006 * 108.28504 * 28.80357 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.7040 -0.2361 2.4827 7 7 2.1427 -0.8557 3.5566 8 14 0.6369 1.2876 2.6541 9 1 -0.7924 0.8879 2.7032 10 1 0.9939 2.0038 3.9051 11 1 0.8611 2.1823 1.4903 12 6 2.0400 -0.7213 -1.2491 13 1 1.6717 -1.7472 -1.2533 14 6 1.5505 -0.0055 -2.4777 15 6 1.3019 -0.8779 -3.7342 16 6 2.3909 -1.8910 -4.1021 17 6 3.7465 -1.2753 -3.9434 18 6 4.2448 -1.7773 -2.5947 19 16 3.8896 -0.7285 -1.2469 20 1 -0.3633 0.6171 -0.8217 21 1 -0.3633 -1.0202 -0.1235 22 1 -0.3633 0.4031 0.9453 23 1 1.9120 -0.5218 4.4376 24 1 0.6168 0.4973 -2.2258 25 1 2.2827 0.7592 -2.7371 26 1 1.1628 -0.2104 -4.5845 27 1 0.3709 -1.4247 -3.5848 28 1 2.2563 -2.2058 -5.1369 29 1 2.3096 -2.7586 -3.4473 30 1 3.6713 -0.1879 -3.9395 31 1 4.4118 -1.6060 -4.7409 32 1 5.3253 -1.9081 -2.6538 33 1 3.7916 -2.7500 -2.4031 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260433696.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = -15.008723 kcal Electronic energy + Delta-G solvation = -13064.128074 eV Core-core repulsion = 11022.479868 eV Total energy + Delta-G solvation = -2041.648206 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.52233 -35.24002 -32.16564 -30.55596 -28.04772 -25.51420 -24.31858 -22.53953 -20.17196 -18.86059 -16.66627 -16.37743 -15.27019 -14.58273 -14.19114 -13.94703 -13.69973 -13.06660 -12.78690 -12.41647 -12.10677 -11.83445 -11.70834 -11.46651 -10.96637 -10.66247 -10.46126 -10.24374 -10.07878 -9.94186 -9.77296 -9.24615 -9.04998 -8.82221 -8.47227 -6.79457 -5.98408 -3.96576 2.55165 3.29510 3.36349 3.41639 3.43496 4.46696 4.85960 4.93817 5.05366 5.32928 5.34116 5.37624 5.48460 5.84220 5.89924 5.95376 6.00928 6.02976 6.19801 6.21976 6.25350 6.32428 6.43692 6.49879 6.57838 6.71207 6.77927 7.04600 7.44635 7.79111 8.59551 9.10190 9.62784 11.14250 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.044261 B = 0.010278 C = 0.008978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.454750 B = 2723.578550 C = 3118.010599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.023 3.977 3 H 0.033 0.967 4 C -0.504 4.504 5 H 0.085 0.915 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.883 3.117 9 H -0.281 1.281 10 H -0.298 1.298 11 H -0.267 1.267 12 C -0.008 4.008 13 H 0.077 0.923 14 C -0.128 4.128 15 C -0.116 4.116 16 C -0.123 4.123 17 C -0.117 4.117 18 C -0.136 4.136 19 S -0.209 6.209 20 H 0.032 0.968 21 H 0.051 0.949 22 H 0.044 0.956 23 H 0.262 0.738 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 0.319 -14.207 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.003 3.997 3 H 0.051 0.949 4 C -0.543 4.543 5 H 0.103 0.897 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.714 3.286 9 H -0.208 1.208 10 H -0.226 1.226 11 H -0.192 1.192 12 C -0.136 4.136 13 H 0.095 0.905 14 C -0.167 4.167 15 C -0.154 4.154 16 C -0.161 4.161 17 C -0.157 4.157 18 C -0.285 4.285 19 S 0.021 5.979 20 H 0.051 0.949 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.024 0.808 -13.339 13.363 hybrid contribution -1.418 0.021 -0.610 1.544 sum -1.442 0.828 -13.949 14.048 Atomic orbital electron populations 1.22254 0.98660 1.00486 0.99029 1.19068 0.91568 0.96623 0.92395 0.94856 1.21068 1.31359 1.13732 0.88102 0.89731 1.24993 0.95816 0.96431 0.95951 1.69896 1.45849 1.40291 0.97815 0.86918 0.80469 0.84211 0.76991 1.20811 1.22604 1.19165 1.23029 0.90549 1.02486 0.97520 0.90465 1.21946 1.02599 0.98872 0.93288 1.21859 0.98367 0.97685 0.97457 1.21315 0.95106 0.98682 1.00960 1.21273 0.96539 1.01689 0.96160 1.22750 1.04706 1.02828 0.98184 1.86775 1.10570 1.64450 1.36145 0.94899 0.92990 0.93702 0.92819 0.90687 0.91679 0.92680 0.92854 0.92299 0.91865 0.90277 0.91807 0.89300 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.26 37.16 0.31 -2.75 16 2 C 0.02 0.54 1.47 -91.77 -0.14 0.40 16 3 H 0.03 0.81 7.18 -51.93 -0.37 0.44 16 4 C -0.50 -14.02 8.48 -34.44 -0.29 -14.31 16 5 H 0.08 2.57 7.62 -52.49 -0.40 2.17 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 8 Si 0.88 22.08 24.43 -169.99 -4.15 17.93 16 9 H -0.28 -6.81 6.82 56.52 0.39 -6.42 16 10 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 11 H -0.27 -6.39 6.53 56.52 0.37 -6.02 16 12 C -0.01 -0.15 1.86 -28.04 -0.05 -0.20 16 13 H 0.08 1.55 8.05 -51.93 -0.42 1.13 16 14 C -0.13 -2.04 4.52 -27.00 -0.12 -2.16 16 15 C -0.12 -1.52 5.58 -25.58 -0.14 -1.66 16 16 C -0.12 -1.52 5.61 -28.24 -0.16 -1.68 16 17 C -0.12 -1.50 5.78 -28.71 -0.17 -1.66 16 18 C -0.14 -2.07 5.45 36.80 0.20 -1.87 16 19 S -0.21 -4.14 20.12 -107.50 -2.16 -6.30 16 20 H 0.03 0.58 6.28 -51.93 -0.33 0.26 16 21 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.04 1.01 3.26 -51.93 -0.17 0.84 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.07 1.18 5.48 -51.93 -0.28 0.90 16 25 H 0.06 1.04 6.83 -51.93 -0.35 0.68 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.84 6.69 -51.93 -0.35 0.49 16 30 H 0.08 1.07 6.50 -51.93 -0.34 0.73 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.27 8.14 -48.46 -0.39 0.87 16 33 H 0.07 1.15 6.78 -48.46 -0.33 0.82 16 LS Contribution 253.24 15.07 3.82 3.82 Total: -1.00 -29.56 253.24 -7.41 -36.97 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.03 Total: -1.41 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -0.66 Total: -24.00 kcal Atomic # 7 Polarization: -27.78 SS G_CDS: 0.77 Total: -27.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.15 Total: 17.93 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -2.16 Total: -6.30 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.56 -7.41 -36.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433696.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.964 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds