Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47169 * 2 1 4 4 C 1.50705 * 109.47077 * 119.99930 * 2 1 3 5 5 H 1.07998 * 120.00172 * 119.99764 * 4 2 1 6 6 C 1.37872 * 119.99847 * 299.72606 * 4 2 1 7 7 N 1.31516 * 120.00011 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 120.00309 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46809 * 90.00261 * 8 6 4 10 10 H 1.48505 * 109.47459 * 210.00370 * 8 6 4 11 11 H 1.48498 * 109.47026 * 330.00232 * 8 6 4 12 12 C 1.52994 * 109.47180 * 239.99661 * 2 1 3 13 13 H 1.09000 * 109.52354 * 300.37329 * 12 2 1 14 14 C 1.50375 * 109.51846 * 60.54855 * 12 2 1 15 15 C 1.54973 * 116.52990 * 210.75775 * 14 12 2 16 16 C 1.53214 * 116.92931 * 313.81028 * 15 14 12 17 17 C 1.49728 * 110.25246 * 317.77547 * 16 15 14 18 18 C 1.52294 * 104.74889 * 99.50146 * 17 16 15 19 19 S 1.74435 * 114.79835 * 267.52289 * 18 17 16 20 20 H 1.08992 * 109.46906 * 53.09334 * 1 2 3 21 21 H 1.09002 * 109.46992 * 173.09871 * 1 2 3 22 22 H 1.09000 * 109.46922 * 293.09436 * 1 2 3 23 23 H 0.97002 * 120.00545 * 179.97438 * 7 6 4 24 24 H 1.08999 * 108.04035 * 332.53280 * 14 12 2 25 25 H 1.09001 * 108.04025 * 88.97778 * 14 12 2 26 26 H 1.09000 * 107.95373 * 191.93541 * 15 14 12 27 27 H 1.08996 * 107.95749 * 75.69132 * 15 14 12 28 28 H 1.08999 * 109.34007 * 197.53784 * 16 15 14 29 29 H 1.09002 * 109.21024 * 77.93178 * 16 15 14 30 30 H 1.08996 * 110.37374 * 340.69046 * 17 16 15 31 31 H 1.09001 * 110.51016 * 218.37296 * 17 16 15 32 32 H 1.08991 * 108.41774 * 146.14696 * 18 17 16 33 33 H 1.09006 * 108.28504 * 28.80357 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.7040 -0.2361 2.4827 7 7 2.1427 -0.8557 3.5566 8 14 0.6369 1.2876 2.6541 9 1 -0.7924 0.8879 2.7032 10 1 0.9939 2.0038 3.9051 11 1 0.8611 2.1823 1.4903 12 6 2.0400 -0.7213 -1.2491 13 1 1.6717 -1.7472 -1.2533 14 6 1.5505 -0.0055 -2.4777 15 6 1.3019 -0.8779 -3.7342 16 6 2.3909 -1.8910 -4.1021 17 6 3.7465 -1.2753 -3.9434 18 6 4.2448 -1.7773 -2.5947 19 16 3.8896 -0.7285 -1.2469 20 1 -0.3633 0.6171 -0.8217 21 1 -0.3633 -1.0202 -0.1235 22 1 -0.3633 0.4031 0.9453 23 1 1.9120 -0.5218 4.4376 24 1 0.6168 0.4973 -2.2258 25 1 2.2827 0.7592 -2.7371 26 1 1.1628 -0.2104 -4.5845 27 1 0.3709 -1.4247 -3.5848 28 1 2.2563 -2.2058 -5.1369 29 1 2.3096 -2.7586 -3.4473 30 1 3.6713 -0.1879 -3.9395 31 1 4.4118 -1.6060 -4.7409 32 1 5.3253 -1.9081 -2.6538 33 1 3.7916 -2.7500 -2.4031 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433696.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = -32.577039 kcal Electronic energy + Delta-G solvation = -13064.889893 eV Core-core repulsion = 11022.479868 eV Total energy + Delta-G solvation = -2042.410025 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.80238 -36.80250 -34.12439 -32.01214 -29.41923 -27.31819 -25.86541 -23.76894 -21.76964 -20.20563 -18.65533 -17.93568 -16.82299 -16.04489 -15.63280 -15.22327 -15.07439 -14.78884 -14.41388 -14.19786 -13.50478 -13.18674 -13.07873 -12.93817 -12.58390 -12.29210 -11.94544 -11.64758 -11.50375 -11.37013 -11.24757 -11.00605 -10.92827 -10.68561 -10.31073 -8.39789 -8.19239 -6.23247 1.07863 1.31096 1.38322 1.47772 1.93652 2.36938 3.14038 3.75141 3.81374 3.96094 4.16624 4.21574 4.27515 4.49910 4.55948 4.69418 4.71164 4.81530 4.89515 4.94508 4.98793 5.06570 5.16379 5.21623 5.30877 5.33660 5.43529 5.52061 5.66324 5.72896 6.39027 6.83957 7.39372 8.95068 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.044261 B = 0.010278 C = 0.008978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.454750 B = 2723.578550 C = 3118.010599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.021 3.979 3 H 0.024 0.976 4 C -0.500 4.500 5 H 0.041 0.959 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.947 3.053 9 H -0.264 1.264 10 H -0.305 1.305 11 H -0.248 1.248 12 C 0.008 3.992 13 H 0.066 0.934 14 C -0.124 4.124 15 C -0.113 4.113 16 C -0.123 4.123 17 C -0.110 4.110 18 C -0.118 4.118 19 S -0.286 6.286 20 H 0.072 0.928 21 H 0.056 0.944 22 H 0.031 0.969 23 H 0.262 0.738 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.154 1.221 -17.088 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.001 3.999 3 H 0.042 0.958 4 C -0.538 4.538 5 H 0.060 0.940 6 C -0.189 4.189 7 N -0.594 5.594 8 Si 0.774 3.226 9 H -0.191 1.191 10 H -0.233 1.233 11 H -0.171 1.171 12 C -0.120 4.120 13 H 0.084 0.916 14 C -0.163 4.163 15 C -0.151 4.151 16 C -0.161 4.161 17 C -0.149 4.149 18 C -0.267 4.267 19 S -0.057 6.057 20 H 0.091 0.909 21 H 0.075 0.925 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.386 1.708 -16.251 16.399 hybrid contribution -0.880 -0.364 0.250 0.985 sum -2.266 1.344 -16.001 16.217 Atomic orbital electron populations 1.22168 0.96423 1.01671 0.99880 1.19027 0.93351 0.95645 0.91898 0.95808 1.21319 1.29893 1.12354 0.90281 0.94029 1.25867 0.97600 0.99887 0.95594 1.70063 1.48282 1.42629 0.98442 0.85883 0.79228 0.80346 0.77131 1.19061 1.23294 1.17140 1.22859 0.89500 1.01795 0.97884 0.91583 1.21880 1.02497 0.99049 0.92825 1.21840 0.98799 0.97966 0.96505 1.21328 0.94478 0.97929 1.02326 1.21252 0.97366 1.01460 0.94855 1.22756 1.05317 1.01060 0.97528 1.86968 1.12300 1.66084 1.40313 0.90946 0.92525 0.95045 0.92924 0.89992 0.91708 0.90293 0.92270 0.89539 0.93170 0.90646 0.89043 0.88341 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.26 71.98 0.59 -5.05 16 2 C 0.02 0.94 1.47 -11.54 -0.02 0.92 16 3 H 0.02 1.14 7.18 -2.39 -0.02 1.12 16 4 C -0.50 -28.60 8.48 25.60 0.22 -28.38 16 5 H 0.04 2.67 7.62 -2.91 -0.02 2.65 16 6 C 0.01 0.38 5.45 84.65 0.46 0.84 16 7 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 8 Si 0.95 45.65 24.43 68.60 1.68 47.32 16 9 H -0.26 -11.98 6.82 99.48 0.68 -11.30 16 10 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 11 H -0.25 -11.05 6.53 99.48 0.65 -10.40 16 12 C 0.01 0.29 1.86 29.74 0.06 0.35 16 13 H 0.07 2.63 8.05 -2.39 -0.02 2.62 16 14 C -0.12 -3.60 4.52 30.42 0.14 -3.46 16 15 C -0.11 -2.52 5.58 31.34 0.17 -2.35 16 16 C -0.12 -2.60 5.61 29.62 0.17 -2.43 16 17 C -0.11 -2.46 5.78 29.31 0.17 -2.29 16 18 C -0.12 -3.45 5.45 71.75 0.39 -3.06 16 19 S -0.29 -11.44 20.12 -56.49 -1.14 -12.57 16 20 H 0.07 2.29 6.28 -2.39 -0.02 2.28 16 21 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 22 H 0.03 1.32 3.26 -2.39 -0.01 1.32 16 23 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 24 H 0.08 2.27 5.48 -2.39 -0.01 2.26 16 25 H 0.06 1.91 6.83 -2.39 -0.02 1.89 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.20 6.69 -2.39 -0.02 1.18 16 30 H 0.07 1.80 6.50 -2.39 -0.02 1.78 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 2.68 8.14 -4.60 -0.04 2.64 16 33 H 0.07 2.13 6.78 -4.59 -0.03 2.10 16 Total: -1.00 -66.36 253.24 4.14 -62.21 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 0.96 Total: 8.75 kcal Atomic # 6 Polarization: -47.28 SS G_CDS: 2.35 Total: -44.93 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.30 Total: -60.78 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.68 Total: 47.32 kcal Atomic # 16 Polarization: -11.44 SS G_CDS: -1.14 Total: -12.57 kcal Total: -66.36 4.14 -62.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433696.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.634 kcal (2) G-P(sol) polarization free energy of solvation -66.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds