Wall clock time and date at job start Mon Mar 30 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 109.47669 * 2 1 4 4 C 1.50701 * 109.47442 * 239.99493 * 2 1 3 5 5 H 1.08000 * 120.00435 * 245.68046 * 4 2 1 6 6 C 1.37880 * 119.99814 * 65.67135 * 4 2 1 7 7 N 1.31516 * 119.99784 * 355.22838 * 6 4 2 8 8 Si 1.86797 * 120.00263 * 175.21775 * 6 4 2 9 9 H 1.48506 * 109.46663 * 95.00216 * 8 6 4 10 10 H 1.48499 * 109.47641 * 215.00129 * 8 6 4 11 11 H 1.48504 * 109.47141 * 335.00583 * 8 6 4 12 12 C 1.53007 * 109.47119 * 119.99631 * 2 1 3 13 13 H 1.08993 * 108.34013 * 298.21851 * 12 2 1 14 14 C 1.52292 * 108.41393 * 180.75461 * 12 2 1 15 15 C 1.49726 * 104.89512 * 146.07295 * 14 12 2 16 16 C 1.53339 * 110.18065 * 99.29073 * 15 14 12 17 17 C 1.54971 * 117.05118 * 318.04848 * 16 15 14 18 18 C 1.50364 * 116.53297 * 313.69526 * 17 16 15 19 19 S 1.74441 * 108.41647 * 55.52522 * 12 2 1 20 20 H 1.09006 * 109.47286 * 64.78934 * 1 2 3 21 21 H 1.09003 * 109.47366 * 184.78612 * 1 2 3 22 22 H 1.09001 * 109.47426 * 304.78787 * 1 2 3 23 23 H 0.97009 * 119.99935 * 179.97438 * 7 6 4 24 24 H 1.09000 * 110.37658 * 264.94942 * 14 12 2 25 25 H 1.08991 * 110.38080 * 27.18386 * 14 12 2 26 26 H 1.08994 * 109.33941 * 219.82211 * 15 14 12 27 27 H 1.09003 * 109.33719 * 339.33835 * 15 14 12 28 28 H 1.09000 * 107.98511 * 196.06704 * 16 15 14 29 29 H 1.09005 * 107.77732 * 79.86976 * 16 15 14 30 30 H 1.08999 * 108.03876 * 191.91251 * 17 16 15 31 31 H 1.09002 * 108.03602 * 75.47727 * 17 16 15 32 32 H 1.08996 * 109.51761 * 330.94327 * 18 17 16 33 33 H 1.08996 * 109.52282 * 210.75674 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5755 -1.6390 -1.1339 6 6 1.7984 -0.1753 -2.4793 7 7 1.0573 0.9040 -2.6039 8 14 2.5342 -0.9829 -3.9944 9 1 1.5395 -1.9081 -4.5945 10 1 2.8988 0.0618 -4.9847 11 1 3.7491 -1.7448 -3.6086 12 6 2.0399 -0.7212 1.2493 13 1 1.6930 -0.1749 2.1264 14 6 3.5625 -0.6907 1.2346 15 6 3.9594 -0.5898 2.6747 16 6 4.3529 -1.9707 3.2129 17 6 3.4660 -3.1700 2.7925 18 6 1.9787 -2.9740 2.8950 19 16 1.3404 -2.3187 1.2877 20 1 -0.3634 0.4378 -0.9298 21 1 -0.3634 -1.0241 0.0857 22 1 -0.3634 0.5863 0.8440 23 1 0.8929 1.2808 -3.4826 24 1 3.9562 -1.6076 0.7959 25 1 3.9194 0.1776 0.6809 26 1 4.8030 0.0938 2.7696 27 1 3.1199 -0.2061 3.2545 28 1 4.3547 -1.9196 4.3017 29 1 5.3727 -2.1765 2.8875 30 1 3.7375 -4.0243 3.4126 31 1 3.7032 -3.4189 1.7581 32 1 1.7592 -2.2627 3.6912 33 1 1.4999 -3.9280 3.1154 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260433701.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:25 Heat of formation + Delta-G solvation = -23.991116 kcal Electronic energy + Delta-G solvation = -13123.860301 eV Core-core repulsion = 11081.822590 eV Total energy + Delta-G solvation = -2042.037712 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.34859 -34.75681 -32.03881 -30.36104 -27.82562 -25.07646 -24.11531 -22.16975 -19.87279 -19.12889 -16.71098 -15.72936 -15.07435 -14.42792 -14.07767 -13.66598 -13.55105 -12.92112 -12.36938 -12.16795 -11.87115 -11.44182 -11.28986 -10.89392 -10.72825 -10.55910 -10.48601 -10.25107 -10.05142 -9.97409 -9.70739 -9.25898 -8.90680 -8.49520 -8.26110 -6.67107 -5.92199 -3.95221 2.58926 3.35751 3.42704 3.46725 3.55382 4.51099 4.94939 5.06006 5.22453 5.40091 5.47342 5.60238 5.77200 5.88056 5.91065 6.06177 6.16829 6.30195 6.34918 6.48821 6.55067 6.63616 6.86192 6.94421 7.03760 7.24951 7.37517 7.76219 7.98981 8.16481 8.49649 9.08419 9.68131 11.14824 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.036900 B = 0.010362 C = 0.009872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.621868 B = 2701.637115 C = 2835.525424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.059 3.941 3 H 0.035 0.965 4 C -0.499 4.499 5 H 0.065 0.935 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.888 3.112 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.274 1.274 12 C -0.072 4.072 13 H 0.056 0.944 14 C -0.098 4.098 15 C -0.126 4.126 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.103 4.103 19 S -0.191 6.191 20 H 0.077 0.923 21 H 0.041 0.959 22 H 0.005 0.995 23 H 0.258 0.742 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.094 -4.801 9.977 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.040 3.960 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.716 3.284 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.198 1.198 12 C -0.202 4.202 13 H 0.074 0.926 14 C -0.137 4.137 15 C -0.163 4.163 16 C -0.151 4.151 17 C -0.156 4.156 18 C -0.250 4.250 19 S 0.037 5.963 20 H 0.096 0.904 21 H 0.060 0.940 22 H 0.024 0.976 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.355 -5.168 9.102 10.991 hybrid contribution 1.153 0.368 0.031 1.210 sum 4.508 -4.800 9.133 11.259 Atomic orbital electron populations 1.21903 0.98520 0.99120 1.00243 1.18715 0.92803 0.95154 0.89373 0.94674 1.21213 1.34536 1.07839 0.90137 0.91710 1.24958 0.95215 0.95098 0.98886 1.69923 1.38088 1.21980 1.23265 0.86639 0.79654 0.79004 0.83094 1.20900 1.21479 1.19843 1.22678 0.97978 0.95821 1.03685 0.92611 1.21124 0.94611 1.03458 0.94557 1.21429 1.01047 0.95988 0.97861 1.21858 0.99055 0.94530 0.99654 1.21581 0.93724 0.97466 1.02868 1.23381 0.98059 1.03476 1.00130 1.86488 1.66383 1.18617 1.24850 0.90396 0.94039 0.97561 0.93235 0.90701 0.90610 0.92357 0.92493 0.93485 0.92544 0.92559 0.90898 0.91106 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.83 37.15 0.33 -3.14 16 2 C 0.06 1.46 1.85 -91.77 -0.17 1.29 16 3 H 0.04 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.50 -13.44 7.22 -34.44 -0.25 -13.69 16 5 H 0.06 1.76 7.14 -52.49 -0.37 1.38 16 6 C 0.06 1.64 5.35 -17.82 -0.10 1.54 16 7 N -0.89 -25.80 11.54 55.43 0.64 -25.16 16 8 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C -0.07 -1.48 1.66 -27.09 -0.04 -1.53 16 13 H 0.06 1.11 6.79 -48.31 -0.33 0.78 16 14 C -0.10 -1.83 4.36 -28.71 -0.13 -1.95 16 15 C -0.13 -1.89 5.63 -28.18 -0.16 -2.05 16 16 C -0.11 -1.50 5.57 -25.52 -0.14 -1.64 16 17 C -0.12 -1.61 5.05 -27.01 -0.14 -1.75 16 18 C -0.10 -1.52 6.23 35.84 0.22 -1.30 16 19 S -0.19 -3.77 18.05 -107.50 -1.94 -5.71 16 20 H 0.08 2.13 6.26 -51.93 -0.33 1.81 16 21 H 0.04 1.01 6.47 -51.93 -0.34 0.67 16 22 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.07 1.44 6.44 -51.93 -0.33 1.11 16 25 H 0.08 1.51 7.74 -51.93 -0.40 1.11 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.87 6.71 -51.93 -0.35 0.52 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.12 6.83 -51.93 -0.35 0.77 16 32 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 259.87 15.07 3.92 3.92 Total: -1.00 -27.96 259.87 -8.29 -36.25 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.31 Total: -1.69 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -0.57 Total: -24.20 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.64 Total: -25.16 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -1.94 Total: -5.71 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.96 -8.29 -36.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433701.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.260 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds