Wall clock time and date at job start Mon Mar 30 2020 02:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47324 * 2 1 4 4 C 1.53000 * 112.99812 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46886 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46886 * 180.02562 * 5 4 3 7 7 O 1.42903 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.34928 * 116.99484 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00342 * 0.02562 * 8 7 6 10 10 C 1.38636 * 119.99689 * 180.02562 * 8 7 6 11 11 N 1.31580 * 120.00303 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00117 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47062 * 90.00071 * 12 10 8 14 14 H 1.48505 * 109.47207 * 210.00143 * 12 10 8 15 15 H 1.48508 * 109.47189 * 330.00188 * 12 10 8 16 16 C 1.54034 * 113.81494 * 311.82759 * 3 2 1 17 17 O 1.44442 * 85.42417 * 91.80565 * 16 3 2 18 18 C 1.44177 * 93.38079 * 24.09012 * 17 16 3 19 19 H 1.09000 * 109.47036 * 59.99976 * 1 2 3 20 20 H 1.08997 * 109.47346 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46656 * 299.99857 * 1 2 3 22 22 H 1.09007 * 109.47213 * 240.00300 * 2 1 3 23 23 H 1.09000 * 109.47326 * 120.00490 * 2 1 3 24 24 H 1.09001 * 109.46741 * 60.00167 * 4 3 2 25 25 H 1.09002 * 109.47398 * 300.00269 * 4 3 2 26 26 H 1.09001 * 109.46652 * 60.00345 * 5 4 3 27 27 H 1.08992 * 109.47514 * 300.00434 * 5 4 3 28 28 H 1.09002 * 109.47398 * 300.00496 * 6 5 4 29 29 H 1.09001 * 109.47194 * 60.00677 * 6 5 4 30 30 H 0.96993 * 120.00651 * 180.02562 * 11 10 8 31 31 H 1.09000 * 113.85825 * 205.91495 * 16 3 2 32 32 H 1.09000 * 113.86389 * 337.61406 * 16 3 2 33 33 H 1.09004 * 113.86556 * 221.76631 * 18 17 16 34 34 H 1.08998 * 113.86909 * 90.05602 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5672 1.5366 0.0006 5 6 3.9875 3.0078 -0.0001 6 6 5.5146 3.1018 -0.0001 7 8 5.9071 4.4759 -0.0001 8 6 7.2313 4.7346 -0.0007 9 1 7.9406 3.9202 -0.0015 10 6 7.6814 6.0458 -0.0002 11 7 8.9728 6.2982 -0.0013 12 14 6.4546 7.4544 0.0005 13 1 6.1296 7.8272 1.4008 14 1 7.0437 8.6244 -0.6992 15 1 5.2150 7.0316 -0.6996 16 6 1.3614 2.3422 -1.0501 17 8 0.4265 2.6675 0.0019 18 6 1.3614 2.3422 1.0501 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.9617 1.0460 -0.8892 25 1 3.9611 1.0462 0.8908 26 1 3.5928 3.4987 0.8895 27 1 3.5936 3.4978 -0.8904 28 1 5.9089 2.6117 0.8901 29 1 5.9088 2.6110 -0.8899 30 1 9.2877 7.2156 -0.0006 31 1 1.9743 3.1844 -1.3714 32 1 0.9187 1.7932 -1.8812 33 1 0.9187 1.7932 1.8812 34 1 1.9743 3.1843 1.3714 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260437675.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:53 Heat of formation + Delta-G solvation = -62.052724 kcal Electronic energy + Delta-G solvation = -14594.819322 eV Core-core repulsion = 12108.378265 eV Total energy + Delta-G solvation = -2486.441058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.06431 -36.70810 -34.38858 -32.84316 -31.68185 -28.50794 -26.66234 -25.27052 -24.23939 -23.00211 -20.96087 -18.41714 -17.46103 -16.45508 -16.28181 -15.86498 -15.01348 -14.97413 -14.48981 -13.68777 -13.21552 -13.05911 -12.93533 -12.40560 -12.29490 -11.89374 -11.73647 -11.67244 -11.08882 -10.97655 -10.65608 -10.61820 -10.24532 -10.21618 -9.95140 -9.48328 -9.41465 -9.24007 -8.15060 -5.98211 -3.65717 3.43238 3.46086 3.62933 3.71186 4.09813 4.53068 4.58558 4.74798 5.08433 5.12632 5.20766 5.22707 5.35626 5.42666 5.44587 5.51704 5.58238 5.70256 5.81119 5.85765 5.93249 6.08789 6.09009 6.16831 6.18571 6.20549 6.29598 6.39737 6.67226 6.68274 7.93741 8.38080 9.41932 9.98123 11.14713 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.056346 B = 0.006051 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.807153 B = 4626.030415 C = 4962.315870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.125 4.125 4 C -0.108 4.108 5 C -0.125 4.125 6 C 0.085 3.915 7 O -0.336 6.336 8 C -0.357 4.357 9 H 0.078 0.922 10 C 0.043 3.957 11 N -0.915 5.915 12 Si 0.907 3.093 13 H -0.281 1.281 14 H -0.291 1.291 15 H -0.265 1.265 16 C 0.036 3.964 17 O -0.380 6.380 18 C 0.036 3.964 19 H 0.058 0.942 20 H 0.048 0.952 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.269 0.731 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.794 -11.612 -0.026 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.136 4.136 3 C -0.125 4.125 4 C -0.145 4.145 5 C -0.162 4.162 6 C 0.007 3.993 7 O -0.252 6.252 8 C -0.435 4.435 9 H 0.095 0.905 10 C -0.154 4.154 11 N -0.560 5.560 12 Si 0.735 3.265 13 H -0.208 1.208 14 H -0.217 1.217 15 H -0.190 1.190 16 C -0.040 4.040 17 O -0.299 6.299 18 C -0.040 4.040 19 H 0.077 0.923 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.114 -11.252 -0.031 19.654 hybrid contribution 0.017 0.425 0.023 0.426 sum -16.098 -10.826 -0.009 19.400 Atomic orbital electron populations 1.21804 0.95217 1.00695 1.02885 1.21261 0.96252 0.93690 1.02410 1.23657 0.96213 0.96456 0.96212 1.21435 0.93213 0.97159 1.02738 1.21719 0.96364 0.95355 1.02773 1.22001 0.92646 0.86005 0.98620 1.85198 1.24891 1.21065 1.94052 1.20379 0.79612 0.94019 1.49489 0.90468 1.24326 0.95837 0.97284 0.97977 1.69686 1.12207 1.20336 1.53809 0.86148 0.81499 0.80681 0.78165 1.20759 1.21731 1.18960 1.24263 0.90126 0.97488 0.92164 1.89667 1.32826 1.90515 1.16905 1.24213 0.90152 0.97469 0.92203 0.92320 0.93327 0.92310 0.91397 0.91393 0.91279 0.91266 0.91335 0.91333 0.95369 0.95369 0.92138 0.89258 0.89607 0.89643 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.63 37.16 0.32 -1.05 16 2 C -0.10 -0.92 5.65 -26.73 -0.15 -1.07 16 3 C -0.13 -1.38 1.38 -153.43 -0.21 -1.59 16 4 C -0.11 -1.32 4.99 -26.73 -0.13 -1.46 16 5 C -0.12 -2.00 4.81 -26.73 -0.13 -2.13 16 6 C 0.08 1.75 6.02 37.16 0.22 1.98 16 7 O -0.34 -9.02 8.61 -16.51 -0.14 -9.17 16 8 C -0.36 -10.75 10.35 30.88 0.32 -10.43 16 9 H 0.08 2.42 8.00 -52.49 -0.42 2.00 16 10 C 0.04 1.29 5.49 -17.51 -0.10 1.20 16 11 N -0.91 -28.77 13.96 55.48 0.77 -28.00 16 12 Si 0.91 23.59 28.61 -169.99 -4.86 18.73 16 13 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 15 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 16 C 0.04 0.43 7.53 37.64 0.28 0.71 16 17 O -0.38 -5.13 10.87 -35.23 -0.38 -5.51 16 18 C 0.04 0.43 7.52 37.64 0.28 0.71 16 19 H 0.06 0.58 6.53 -51.93 -0.34 0.24 16 20 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.06 0.58 6.53 -51.93 -0.34 0.24 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.10 6.07 -51.93 -0.32 0.78 16 27 H 0.07 1.11 6.07 -51.93 -0.32 0.79 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.27 7.89 8.31 -40.82 -0.34 7.55 16 31 H 0.09 1.12 5.83 -51.93 -0.30 0.81 16 32 H 0.09 0.88 7.33 -51.93 -0.38 0.50 16 33 H 0.09 0.87 7.33 -51.93 -0.38 0.49 16 34 H 0.09 1.11 5.83 -51.93 -0.30 0.80 16 LS Contribution 270.58 15.07 4.08 4.08 Total: -1.00 -32.59 270.58 -5.02 -37.61 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -5.19 Total: -4.61 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 0.71 Total: -13.13 kcal Atomic # 7 Polarization: -28.77 SS G_CDS: 0.77 Total: -28.00 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.52 Total: -14.68 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.86 Total: 18.73 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.59 -5.02 -37.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260437675.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.446 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds