Wall clock time and date at job start Mon Mar 30 2020 02:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46995 * 2 1 4 4 C 1.52991 * 109.47303 * 120.00398 * 2 1 3 5 5 H 1.08999 * 109.47198 * 295.35491 * 4 2 1 6 6 C 1.50699 * 109.47408 * 55.35657 * 4 2 1 7 7 H 1.08007 * 119.99621 * 65.54116 * 6 4 2 8 8 C 1.37877 * 120.00515 * 245.53822 * 6 4 2 9 9 N 1.31510 * 119.99607 * 6.20920 * 8 6 4 10 10 Si 1.86799 * 120.00252 * 186.19971 * 8 6 4 11 11 H 1.48501 * 109.46950 * 180.02562 * 10 8 6 12 12 H 1.48499 * 109.46967 * 60.00384 * 10 8 6 13 13 H 1.48501 * 109.47258 * 300.00338 * 10 8 6 14 14 C 1.53005 * 109.47292 * 175.35876 * 4 2 1 15 15 H 1.08997 * 110.29815 * 59.29323 * 14 4 2 16 16 C 1.53702 * 110.34356 * 181.47026 * 14 4 2 17 17 C 1.52935 * 112.49133 * 116.04817 * 16 14 4 18 18 C 1.55152 * 108.96337 * 30.10098 * 17 16 14 19 19 S 1.83387 * 110.33830 * 297.12848 * 14 4 2 20 20 H 1.09004 * 109.46920 * 304.51938 * 1 2 3 21 21 H 1.08998 * 109.47148 * 64.52261 * 1 2 3 22 22 H 1.09002 * 109.47092 * 184.52298 * 1 2 3 23 23 H 1.09004 * 109.46767 * 240.00077 * 2 1 3 24 24 H 1.08997 * 109.47261 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.47398 * 300.00452 * 3 2 1 26 26 H 1.09004 * 109.47300 * 60.00404 * 3 2 1 27 27 H 0.96998 * 120.00330 * 355.10234 * 9 8 6 28 28 H 1.09002 * 108.88724 * 236.84354 * 16 14 4 29 29 H 1.09008 * 108.88729 * 355.39062 * 16 14 4 30 30 H 1.09004 * 109.60622 * 150.02887 * 17 16 14 31 31 H 1.09001 * 109.60366 * 270.35143 * 17 16 14 32 32 H 1.08997 * 111.13053 * 76.46546 * 18 17 16 33 33 H 1.08994 * 111.13351 * 200.61227 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.7463 -0.1617 2.1372 6 6 1.4461 -2.1050 1.3079 7 1 1.7028 -2.8353 0.5547 8 6 0.5751 -2.4389 2.3233 9 7 0.1672 -1.5180 3.1689 10 14 -0.0258 -4.1990 2.4975 11 1 -0.9468 -4.2949 3.6585 12 1 1.1355 -5.0996 2.7106 13 1 -0.7442 -4.6014 1.2617 14 6 3.5657 -0.8232 1.1921 15 1 4.0092 0.1710 1.1366 16 6 4.0971 -1.5777 2.4212 17 6 4.7828 -2.8930 2.0489 18 6 5.4125 -2.7516 0.6380 19 16 4.0836 -1.8335 -0.2480 20 1 -0.3633 0.5824 0.8468 21 1 -0.3633 0.4420 -0.9277 22 1 -0.3633 -1.0245 0.0810 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 0.5330 -0.6208 3.1227 28 1 4.8125 -0.9422 2.9432 29 1 3.2640 -1.7934 3.0903 30 1 5.5628 -3.1176 2.7765 31 1 4.0485 -3.6984 2.0397 32 1 6.3330 -2.1690 0.6750 33 1 5.5860 -3.7278 0.1854 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446543.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:26 Heat of formation + Delta-G solvation = -29.269192 kcal Electronic energy + Delta-G solvation = -13352.389588 eV Core-core repulsion = 11310.123002 eV Total energy + Delta-G solvation = -2042.266586 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.09614 -34.50016 -32.18563 -29.61343 -26.48634 -25.80641 -23.96588 -22.21790 -19.56076 -19.10291 -16.84673 -15.44571 -14.95308 -14.15250 -13.71637 -13.62974 -13.15881 -12.79522 -12.58656 -12.09383 -11.41082 -11.31986 -11.14725 -11.04776 -10.79131 -10.66069 -10.20288 -10.10855 -10.10235 -9.91173 -9.48628 -9.35688 -8.89325 -8.40132 -8.20000 -6.76003 -6.20499 -3.90685 2.66983 3.25729 3.46944 3.48193 3.66681 4.57687 5.25702 5.36595 5.40300 5.67049 5.69438 5.82246 5.96214 6.00656 6.07655 6.13535 6.33721 6.36125 6.43047 6.63049 6.67523 6.73458 6.76091 6.96328 7.04471 7.11520 7.37212 7.54888 7.56969 8.33037 8.65097 9.00995 9.76589 11.12745 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.022686 B = 0.016736 C = 0.011543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.948399 B = 1672.614975 C = 2425.230926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 C -0.148 4.148 4 C 0.042 3.958 5 H 0.052 0.948 6 C -0.565 4.565 7 H 0.063 0.937 8 C 0.021 3.979 9 N -0.919 5.919 10 Si 1.058 2.942 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.289 1.289 14 C -0.012 4.012 15 H 0.064 0.936 16 C -0.113 4.113 17 C -0.114 4.114 18 C -0.077 4.077 19 S -0.295 6.295 20 H 0.039 0.961 21 H 0.022 0.978 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.267 0.733 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 0.319 -2.540 7.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.106 4.106 3 C -0.205 4.205 4 C 0.022 3.978 5 H 0.070 0.930 6 C -0.604 4.604 7 H 0.081 0.919 8 C -0.182 4.182 9 N -0.557 5.557 10 Si 0.887 3.113 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.216 1.216 14 C -0.140 4.140 15 H 0.082 0.918 16 C -0.152 4.152 17 C -0.153 4.153 18 C -0.226 4.226 19 S -0.069 6.069 20 H 0.058 0.942 21 H 0.041 0.959 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.635 -0.700 -2.803 6.332 hybrid contribution 1.514 1.070 0.252 1.871 sum 7.148 0.370 -2.551 7.599 Atomic orbital electron populations 1.21600 0.95729 1.02700 0.98033 1.21258 0.95764 0.93199 1.00371 1.21968 1.00105 0.98392 1.00054 1.19117 0.87012 0.97589 0.94109 0.93035 1.21890 1.28970 0.96655 1.12853 0.91900 1.25651 0.94539 1.04595 0.93421 1.70858 1.41133 1.04311 1.39442 0.83690 0.76299 0.75185 0.76101 1.21226 1.21622 1.21568 1.24052 1.03008 0.96116 0.90868 0.91812 1.21879 1.00080 0.94664 0.98538 1.22267 0.99084 0.99770 0.94143 1.24247 0.98397 1.01891 0.98021 1.87469 1.42993 1.53605 1.22837 0.94207 0.95898 0.91022 0.92504 0.93642 0.94385 0.93653 0.91972 0.93854 0.89030 0.92056 0.90186 0.90833 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 8.98 37.16 0.33 -2.36 16 2 C -0.09 -1.87 2.39 -90.62 -0.22 -2.09 16 3 C -0.15 -2.75 8.95 37.16 0.33 -2.42 16 4 C 0.04 0.96 1.36 -91.77 -0.12 0.84 16 5 H 0.05 1.30 5.73 -51.93 -0.30 1.00 16 6 C -0.56 -14.38 5.12 -34.44 -0.18 -14.55 16 7 H 0.06 1.69 7.06 -52.48 -0.37 1.32 16 8 C 0.02 0.56 5.34 -17.82 -0.10 0.47 16 9 N -0.92 -25.95 13.65 55.43 0.76 -25.19 16 10 Si 1.06 24.57 29.91 -169.99 -5.08 19.48 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 C -0.01 -0.24 2.87 -26.36 -0.08 -0.32 16 15 H 0.06 1.26 6.58 -51.93 -0.34 0.91 16 16 C -0.11 -2.19 5.54 -26.40 -0.15 -2.33 16 17 C -0.11 -1.96 6.34 -25.63 -0.16 -2.13 16 18 C -0.08 -1.26 7.53 38.30 0.29 -0.97 16 19 S -0.30 -5.93 20.08 -107.50 -2.16 -8.09 16 20 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.07 1.74 6.85 -51.93 -0.36 1.38 16 23 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 24 H 0.04 0.81 6.55 -51.93 -0.34 0.47 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.27 7.52 6.28 -40.82 -0.26 7.26 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 2.05 7.07 -51.92 -0.37 1.68 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 265.72 15.07 4.00 4.00 Total: -1.00 -26.94 265.72 -7.81 -34.75 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.29 Total: 0.91 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -0.04 Total: -25.87 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.76 Total: -25.19 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.48 kcal Atomic # 16 Polarization: -5.93 SS G_CDS: -2.16 Total: -8.09 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.94 -7.81 -34.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446543.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.482 kcal (2) G-P(sol) polarization free energy of solvation -26.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds